PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G27960.1 | ||||||||
Common Name | LOC102715821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 205aa MW: 22706.3 Da PI: 6.7308 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.6 | 3.1e-33 | 8 | 125 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGf+F P+deelvv++L++kv+ +++ ++i+++ ++++Pw+L+ k+ + ++wyfF++ + +ra +sg W+ g d++v s +g OB02G27960.1 8 LPPGFHFFPSDEELVVHFLRRKVSLLPCHP-DIIPTLLPHRYNPWELNGKALQAGNQWYFFCHLTQ--------SRASSSGHWNPIGADETVRS-GG 94 79*************************999.89**************966667789******9854........68899**************9.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vglkktL f g+ ++g++t+W+mhey+l OB02G27960.1 95 RSVGLKKTLLFSIGEPSEGVRTNWIMHEYHL 125 *****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-45 | 5 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.148 | 8 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-21 | 9 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MGGGATNLPP GFHFFPSDEE LVVHFLRRKV SLLPCHPDII PTLLPHRYNP WELNGKALQA 60 GNQWYFFCHL TQSRASSSGH WNPIGADETV RSGGRSVGLK KTLLFSIGEP SEGVRTNWIM 120 HEYHLLDGDC INGGSSNSTG SSSNRKSHRK RGHSSMESNS WVLCRVFESS CGSQVSFHGE 180 GTELSCLDEV FLSLDDYDEV SLPNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-33 | 7 | 174 | 19 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-33 | 7 | 174 | 19 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-33 | 7 | 174 | 19 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-33 | 7 | 174 | 19 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-33 | 7 | 174 | 19 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-33 | 7 | 174 | 19 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-33 | 7 | 174 | 19 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-33 | 7 | 174 | 19 | 173 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G27960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108454 | 0.0 | AK108454.1 Oryza sativa Japonica Group cDNA clone:002-143-C12, full insert sequence. | |||
GenBank | CT831377 | 0.0 | CT831377.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN119H17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006647372.1 | 1e-151 | PREDICTED: NAC transcription factor 29-like isoform X2 | ||||
Swissprot | Q8GWK6 | 1e-60 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | J3LDS9 | 1e-150 | J3LDS9_ORYBR; Uncharacterized protein | ||||
STRING | OB02G27960.1 | 1e-150 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3667 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 9e-62 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 102715821 |
Publications ? help Back to Top | |||
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