PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G25330.1 | ||||||||
Common Name | LOC102713441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 25315.7 Da PI: 9.6836 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.7 | 2.5e-12 | 99 | 140 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ gt eeAa+++++a+ OB02G25330.1 99 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 140 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.269 | 74 | 153 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-6 | 98 | 141 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-8 | 98 | 143 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.1E-5 | 98 | 155 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-7 | 101 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MVSLRRRRLM GFCSGKDSLP VDCAKPIENE NSVEVARPNI KPFSVHPLPL TKTSDVLPES 60 SNGSDSLKEE KNQYYPGKEI KRRKRHRRKQ YVDQEPCIMR GVYFKNMKWQ AAIKVDKKQI 120 HLGTVGTQEE AARLYDRAAF MCGREPNFEL SEEEKKELQK YTWKAFLDMT RDTITSKKQR 180 KVGLLRRNKT DVLVGQSDGD TEMINGGGSS HSEDGDAETS AS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G25330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067156 | 0.0 | AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence. | |||
GenBank | CT829643 | 0.0 | CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence. | |||
GenBank | CT841725 | 0.0 | CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006647282.1 | 1e-167 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | J3LD16 | 1e-166 | J3LD16_ORYBR; Uncharacterized protein | ||||
STRING | OB02G25330.1 | 1e-166 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7516 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.2 | 6e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102713441 |