PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G19520.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 295aa    MW: 31194.6 Da    PI: 5.1637
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G19520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.93.3e-16141186449
                   XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                   +kr rr+ +NRe+ArrsR+RK+a ++ Le  v++L +eN +L k+l
  OB02G19520.1 141 VKRMRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFKQL 186
                   79**************************************999665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.3E-16138202IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.013140186IPR004827Basic-leucine zipper domain
PfamPF001703.7E-15141187IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.1E-13142190No hitNo description
SuperFamilySSF579594.44E-13142191No hitNo description
CDDcd147021.27E-23143193No hitNo description
PROSITE patternPS000360145160IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MKKCPSELDF EAFFHGGSGE AADADEQKPA GHAGSHPLFG MFSAADLSAF GFADSVSSTI  60
TGGIPNHIWP QSQSLNARHP AVSTTIESQS SICAASPTSA TNLTMKESQT LGGTSGSDSD  120
SESLFDIEGG PCEQSTNPLD VKRMRRMVSN RESARRSRKR KQAHLADLES QVDQLRGENA  180
SLFKQLTDAS GQFTTAVTDN RILKSDVEAL RVKVKMAEDM VARGAMSCGL GHLGGLSPAL  240
NARQRCVPDV LTGLDYAGDD PFTGLSPPDQ GQMPGGEVVD GCWGWDSHSN GGMSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRSRKRK
2154161RRSRKRKQ
3156161SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G19520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706740.0AK070674.1 Oryza sativa Japonica Group cDNA clone:J023063K11, full insert sequence.
GenBankRICRITA1A0.0L34551.1 Oryza sativa transcriptional activator protein (RITA-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688960.10.0PREDICTED: basic leucine zipper 9-like isoform X2
SwissprotQ6ETX01e-174RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLJ3LBD50.0J3LBD5_ORYBR; Uncharacterized protein
STRINGOB02G19520.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-42basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]