PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G19350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 195aa MW: 21665.3 Da PI: 10.8876 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.4 | 2.4e-11 | 35 | 79 | 5 | 49 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 kr +r NR +A+rsR RK+++i eLe+ v +L+ e +aL ++ OB02G19350.1 35 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRV 79 899*********************************999998666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.1E-13 | 31 | 95 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.611 | 33 | 89 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.2E-12 | 35 | 89 | No hit | No description |
SuperFamily | SSF57959 | 6.54E-12 | 35 | 89 | No hit | No description |
Pfam | PF00170 | 4.1E-10 | 35 | 85 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 2.36E-19 | 36 | 86 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 38 | 53 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDMGEGDDGL AATSPAGAGA MAAAAAAADG IADPKRVKRI LANRQSAQRS RVRKLQYISE 60 LERSVTTLQM EVSALSPRVA FLDHQRSLLT VGNSHLKQRI AALAQDKIFK DAHQDALKKE 120 IERLRQLYHH QQIKATRGAX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXG GAAIR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G19350.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By white light. {ECO:0000269|PubMed:18065552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096247 | 1e-127 | FP096247.1 Phyllostachys edulis cDNA clone: bphyst038a13, full insert sequence. | |||
GenBank | FP097472 | 1e-127 | FP097472.1 Phyllostachys edulis cDNA clone: bphylf047m15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688537.1 | 5e-93 | PREDICTED: basic leucine zipper 19-like | ||||
Swissprot | Q6K3R9 | 5e-67 | BZP19_ORYSJ; Basic leucine zipper 19 | ||||
TrEMBL | J3LBB8 | 1e-92 | J3LBB8_ORYBR; Uncharacterized protein | ||||
STRING | OB02G19350.1 | 2e-93 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1322 | 38 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58120.1 | 2e-56 | bZIP family protein |