PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB02G18010.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 373aa MW: 39409.8 Da PI: 9.292

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB02G18010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.6	1.5e-17	202	235	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + OB02G18010.1 202 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 235 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	5.7E-13	193	236	No hit	No description
SMART	SM00401	1.8E-18	196	247	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.268	200	232	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.5E-14	200	235	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.67E-13	201	231	No hit	No description
Pfam	PF00320	2.8E-15	202	235	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	202	227	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MTIAEPATSS QISSASLPSL FLLSGMSTIY MSQLPATLPL MEGDQDQGLF PAFHRAKDPP 60 ILFPFMIDSA VEHQGQSYGD QSLRRQQVLG ESNQQFNDHV MMGGSDVFLT PSPFRPTIQS 120 IGSDMIQRSS YDLYDVENKH AGGGSSSKWM STPPVKMRII RKGAATDPEG GAAVRKPRRR 180 AQAHQDESQL QQQQAMGVVR VCSDCNTTKT PLWRSGPCGP KSLCNACGIR QRKARRAMAA 240 AANGGAAAPP PAKSAVASGA AVNKPAKKEK RTDVDRSLPF KKRCKMVVDH AVVTATAAKA 300 ATASIDAAAP KNDPDHVVGG GEENDAAAVA ESPATKAAGA TGAPPAFFHG LPRDEITDAA 360 MLLMTLSCGL VRS

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MTIAEPATSS QISSASLPSL FLLSGMSTIY MSQLPATLPL MEGDQDQGLF PAFHRAKDPP  60
ILFPFMIDSA VEHQGQSYGD QSLRRQQVLG ESNQQFNDHV MMGGSDVFLT PSPFRPTIQS  120
IGSDMIQRSS YDLYDVENKH AGGGSSSKWM STPPVKMRII RKGAATDPEG GAAVRKPRRR  180
AQAHQDESQL QQQQAMGVVR VCSDCNTTKT PLWRSGPCGP KSLCNACGIR QRKARRAMAA  240
AANGGAAAPP PAKSAVASGA AVNKPAKKEK RTDVDRSLPF KKRCKMVVDH AVVTATAAKA  300
ATASIDAAAP KNDPDHVVGG GEENDAAAVA ESPATKAAGA TGAPPAFFHG LPRDEITDAA  360
MLLMTLSCGL VRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250\|UniProtKB:Q9SZI6, ECO:0000269\|PubMed:23548780}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB02G18010.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269\|PubMed:23548780}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK099607	0.0	AK099607.1 Oryza sativa Japonica Group cDNA clone:J013048G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006648462.1	0.0	PREDICTED: putative GATA transcription factor 22
Swissprot	Q6YW48	1e-172	CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBL	J3LAY4	0.0	J3LAY4_ORYBR; Uncharacterized protein
STRING	OB02G18010.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1893	38	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26150.1	1e-19	cytokinin-responsive gata factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Behringer C,Schwechheimer C B-GATA transcription factors - insights into their structure, regulation, and role in plant development. Front Plant Sci, 2015. 6: p. 90 [PMID:25755661]