PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G13010.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1135aa    MW: 126179 Da    PI: 6.5113
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G13010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.86.4e-21142243199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+    ++++ 
  OB02G13010.1 142 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDIHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIVV--RDEKH 234
                   99*****************************954.4444.49**********************************************99..55788 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   +l+++++r+
  OB02G13010.1 235 QLLLGIRRA 243
                   889999997 PP
2Auxin_resp117.61.1e-38268351183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  OB02G13010.1 268 AAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 351
                   79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-41131271IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-39134257IPR015300DNA-binding pseudobarrel domain
CDDcd100179.13E-18141242No hitNo description
SMARTSM010196.7E-21142244IPR003340B3 DNA binding domain
PfamPF023621.1E-18142243IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912142244IPR003340B3 DNA binding domain
PfamPF065071.5E-33268351IPR010525Auxin response factor
PfamPF023093.4E-99991087IPR033389AUX/IAA domain
PROSITE profilePS5174529.25810021086IPR000270PB1 domain
SuperFamilySSF542773.63E-710191081No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1135 aa     Download sequence    Send to blast
MATTKQTPAS STATAAASAV PPRGPCEGER KSPAINSELW HACAGPLVSL PPVGSLVVYF  60
PQGHSEQVAA SMQKDVDAHV PSYPNLPSKL ICLLHGVILH ADPDTDEVYA QMTLQPVNTY  120
GKEALQLSEL ALKQARPQME FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ  180
ELQARDIHDN VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVIVVR DEKHQLLLGI  240
RRANRQPTNI SSSVLSSDSM HIGVLAAAAH AAANSSPFTI FYNPRASPTE FVIPFAKYQK  300
ALYSNQISLG MRFRMMFETE ELGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESAAG  360
ERRNRVSIWE IEPVAAPFFL CPQPYFGVKR PRQLDDESEM ENLFKRAMPW LGEEVCIKDA  420
QNQNTTAPGL SLVQWMNMNR QQSSSLANTA AQSEYLQALG NPAMQNLAAD DLARQLYVQN  480
NLLQQNCIQF NSPKLPQQMQ TMNDLSKAAI PLNQLGAIIN PQDQKQDAVS HQRQQNSIQV  540
IPLSQAQSNL VQAQVIVQNQ MQQQKPSPAQ NQQRINSQSL LLPHQQQDQN LQLQQQLLLQ  600
QKQQLQQQQQ QQHNQQQLNK SLGQLVNLAS QQSKLFDEEL QLQILQKLQQ QSLMAQSTAT  660
LSQPPLIQEQ QKLLIDMQKQ LSNSHPLAQQ QMIPQQESKP LLQATPLLPT VQQEQQQKLL  720
QKQVSLADVS EVAFQPISST NVIPKTGGAM IISGAAQSVV TEEMPSCSTS PSTANGNHLA  780
QSTKNRHCIN TERLPPSTAP MLIPTSIDAV TATPTMTKEL PKLNNNVKQS VVNSKLPNVV  840
PGPQNCMNNS LQTDNLETSS SATSLCPSRT DGLMHQGFPS SNFNQHQMFK DTLPDVQIEG  900
VDPTTSGLFG INNDNPLGFP IETEDLLINA LDSVKYPNHI STDVENNYPM QKDALQEIST  960
SMVSQSFGQS DMAFNSIDSA INDGAFLNKN SWHTAPPLQR MRTFTKVYKR GAVGRSIDIG  1020
RYSGYEELKH ALARMFGIEG QLEDRQRIGW KLVYKDHEDD ILLLGDDPWE EFVNCVRCIR  1080
ILSPQEVQQM SLDGDLGSNV LPNQACSSSD GVNGWRPRCD QNSGNPSIGP YDQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1662837245388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G13010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052940.0AP005294.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1679_B08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688452.10.0PREDICTED: auxin response factor 5, partial
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLJ3L9I40.0J3L9I4_ORYBR; Auxin response factor
STRINGOB02G13010.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19