PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB01G51370.1 | ||||||||
Common Name | LOC102715444 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 209aa MW: 23096.1 Da PI: 10.3543 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.2 | 2.9e-31 | 1 | 121 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlsk.kg 97 +GfrF+Ptdeel+ +yL++kv g +l++ +vi+ +d+ ++ PwdLp ++ e yfF+ +++ +g +ra+ +g+W+a+gk++ v++ + OB01G51370.1 1 MGFRFRPTDEELLLHYLRRKVLGCPLPA-DVIPVADLARLRPWDLP---GDGDGERYFFHLPATSCWrRGGGGSRAAGDGVWRASGKETLVVAPrCK 93 5***************************.99***************...346778999998887766269999****************99998688 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vg k+tLvf+ ++ g ++dW mheyrl OB01G51370.1 94 RPVGAKRTLVFF---HRGGARSDWAMHEYRL 121 89**********...677889********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.42 | 1 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-20 | 2 | 121 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-37 | 2 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MGFRFRPTDE ELLLHYLRRK VLGCPLPADV IPVADLARLR PWDLPGDGDG ERYFFHLPAT 60 SCWRRGGGGS RAAGDGVWRA SGKETLVVAP RCKRPVGAKR TLVFFHRGGA RSDWAMHEYR 120 LLPAATNPPP PHHMSGRTPE PSGWGGCRLF KRPTPAHRRS PPRIRAATAR RRSADDMPSS 180 PSSCVTEARE NGGEEEEESS SYSAASNFP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-23 | 2 | 158 | 23 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-23 | 2 | 158 | 23 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-23 | 2 | 158 | 23 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-23 | 2 | 158 | 23 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-23 | 2 | 158 | 23 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-23 | 2 | 158 | 23 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-23 | 2 | 158 | 23 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-23 | 2 | 158 | 23 | 174 | NAC domain-containing protein 19 |
3ulx_A | 1e-23 | 2 | 152 | 18 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB01G51370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK067450 | 1e-132 | AK067450.1 Oryza sativa Japonica Group cDNA clone:J013106M04, full insert sequence. | |||
GenBank | AK068446 | 1e-132 | AK068446.1 Oryza sativa Japonica Group cDNA clone:J013153H06, full insert sequence. | |||
GenBank | AK288942 | 1e-132 | AK288942.1 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence. | |||
GenBank | CT829591 | 1e-132 | CT829591.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017E23, full insert sequence. | |||
GenBank | CT829592 | 1e-132 | CT829592.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B01, full insert sequence. | |||
GenBank | CU406744 | 1e-132 | CU406744.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109J05, full insert sequence. | |||
GenBank | GU120351 | 1e-132 | GU120351.1 Oryza sativa Japonica Group clone KCG153D01 NAC4 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015692758.1 | 1e-150 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | J3L7D1 | 1e-148 | J3L7D1_ORYBR; Uncharacterized protein | ||||
STRING | OB01G51370.1 | 1e-149 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-31 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 102715444 |