PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G51240.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 340aa MW: 38558.9 Da PI: 6.5094

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G51240.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.4	6.6e-31	80	134	3	57
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakp 57 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLlqqa+ OB01G51240.1 80 PKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEX 134 6999*************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-25	84	134	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	23.153	85	139	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MDPKFPPPPP LNKTEPTTTA TTVTATNQHQ HQHQQQLDPK QYQQEEQRRR LQIEVQEQQD 60 GGAGKEQQVV GERRVQGLGP KRSSNKDRHT KVDGRGRRIR MPALCAARIF QLTRELGHKS 120 DGETVQWLLQ QAEXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 240 XXXXXXXXXX XXXGGGHIGF APMFAGHAAA AMPGLELGLS QDGHIGVLAA QSLSQFYHQV 300 GGAGASGQLQ HPHQHHQHQQ QQEDGEDDRD DGESDEESGQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G51240.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	3e-77	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	J3L7B8	1e-64	J3L7B8_ORYBR; Uncharacterized protein
STRING	OB01G51240.1	2e-65	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2864	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	4e-32	TCP family protein