PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G50400.1
Common NameLOC102700386
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 481aa    MW: 50217 Da    PI: 6.4464
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G50400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09287334455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  OB01G50400.1 287 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 334
                   8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.26E-10281338No hitNo description
SuperFamilySSF474591.44E-16281352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256283333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16285351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6287334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10289339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MNCGPPDQLP PATAPSCFLN LNWDQSMDAA GGHLDPALSS MVSSPAASNS TAAPDGLALH  60
GISPQTHYGG TPLSSPPKLN LSMMGQFHHY PPQVGGAGAG AGGLPILENL MPMGPLDQFL  120
ADPGFAERAA RLSGFDARGG GGGYGGAGPA QFGLPDAGPA GASKDMELGN TRDESSVSDP  180
APGGAEIPPK GASDGNARKR KASGKGKGKD SPMSTSAAKE DSGGKRCKST EESNAAAEEN  240
SGKGKAAQSN SENGGGKKQG KDSSSKPPEP PKDYIHVRAR RGEATDSHSL AERVRREKIS  300
QRMKLLQDLV PGCNKVVGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPQ LDFNNLPNLL  360
PKDMHQSCSP LQSSHFPLET SGAPLPYINQ PQQGNPLGCG LTNGMDNQGS MHPLDPAFCR  420
TMGSHHPFLN GVSDAASQVG AFWQDDLQSV VQMDMGQSQE IATSSNSYNG SLQTVHMKME  480
L
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G50400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010630.0AK101063.1 Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645221.10.0PREDICTED: transcription factor bHLH77 isoform X2
TrEMBLJ3L7340.0J3L734_ORYBR; Uncharacterized protein
STRINGOB01G50400.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.17e-56bHLH family protein