PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G48490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 168aa MW: 18980 Da PI: 12.061 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53 | 8.6e-17 | 16 | 66 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+Wv+eIr+p + r r +lg++ t+e Aa a++ a l+g OB01G48490.1 16 CRYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVYFLRG 66 78*****777.**********943...5**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-9 | 16 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-16 | 17 | 68 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.3E-22 | 17 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.205 | 17 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-23 | 17 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-9 | 18 | 29 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.71E-13 | 25 | 69 | No hit | No description |
PRINTS | PR00367 | 8.5E-9 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MSRAGCGGGG GEEERCRYRG VRRRRWGKWV SEIRVPGTRE RLWLGSYATP EAAAVAHDTA 60 VYFLRGSDSX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXRP RRRTRVTSSP 120 SLEPARRPRG TACTLLARLP AGAPEPAAAS SSLSVLRKLA WMTWRFLM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G48490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF229199 | 9e-76 | AF229199.1 Oryza sativa chromosome 1 clone OSJNBa0048I01, complete sequence. | |||
GenBank | AP003346 | 9e-76 | AP003346.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0434C04. | |||
GenBank | AP003379 | 9e-76 | AP003379.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408G07. | |||
GenBank | AP014957 | 9e-76 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J3L6J3 | 1e-43 | J3L6J3_ORYBR; Uncharacterized protein | ||||
STRING | OB01G48490.1 | 2e-44 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6433 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22810.1 | 3e-15 | ERF family protein |