PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G44400.1 | ||||||||
Common Name | LOC102711753 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 249aa MW: 26183.7 Da PI: 6.7867 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.8 | 5.6e-41 | 61 | 160 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l +++e er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l+ael+++ OB01G44400.1 61 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVSEAERADAASSLVYEANLRLRDPVYGCMGAISMLQQQVNALEAELEAV 157 7**********************************************************************************************99 PP DUF260 98 kee 100 ++e OB01G44400.1 158 RTE 160 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.1080.10 | 5.8E-4 | 53 | 179 | No hit | No description |
PROSITE profile | PS50891 | 25.274 | 60 | 161 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.8E-41 | 61 | 158 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MSTERERLDE VGKKIKREPD TSGVVVAAAA ATGTATATGA PIEHRVPHRL GLGGAVNTVT 60 PCAACKLLRR RCAQECPFAP YFSPHEPHKF AAVHKVFGAS NVSKMLLEVS EAERADAASS 120 LVYEANLRLR DPVYGCMGAI SMLQQQVNAL EAELEAVRTE IFKHRYRQAG AGVPGLMDDV 180 HAAAVFPSPA PPPIHARDVV SVVEAGGQEL TGAPVISAAA SPPVYAAGQP SSTTDYGSLN 240 TSEHAAYFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-42 | 61 | 182 | 11 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-42 | 61 | 182 | 11 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G44400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121919 | 0.0 | AK121919.1 Oryza sativa Japonica Group cDNA clone:J033106D14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644931.1 | 0.0 | PREDICTED: LOB domain-containing protein 15 isoform X1 | ||||
Swissprot | Q8L5T5 | 8e-67 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 2e-66 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | J3L5D4 | 0.0 | J3L5D4_ORYBR; Uncharacterized protein | ||||
STRING | OB01G44400.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 7e-69 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Entrez Gene | 102711753 |
Publications ? help Back to Top | |||
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