PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G40300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 157aa MW: 17613.3 Da PI: 11.0925 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.1 | 5.9e-11 | 30 | 68 | 4 | 42 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 kr +r NR +A+rsR RK+++i eLe+ v +L++e OB01G40300.1 30 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEV 68 5999********************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.2E-14 | 27 | 91 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.795 | 29 | 81 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.53E-12 | 31 | 85 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.2E-14 | 31 | 84 | No hit | No description |
Pfam | PF00170 | 4.3E-10 | 31 | 76 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 8.10E-21 | 32 | 83 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 34 | 49 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MAQLPPKIPV AAPPQQEQAA ASPTELIRDP KRVKRILANR QSAQRSRVRK LQYISELERS 60 VTTLQNEVSV LSPRVAFLDQ QRTILTVGNS HLKQRIAALA QDKIFKDAHQ EALRKEIERL 120 RQVYQQQNIK LSGGLAADHA HAHGGPPPVR AEKELMS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G40300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108553 | 0.0 | AK108553.1 Oryza sativa Japonica Group cDNA clone:002-144-E08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646335.1 | 1e-100 | PREDICTED: basic leucine zipper 6, partial | ||||
Swissprot | Q5JMK6 | 5e-95 | BZP06_ORYSJ; Basic leucine zipper 6 | ||||
TrEMBL | J3L474 | 1e-108 | J3L474_ORYBR; Uncharacterized protein | ||||
STRING | OB01G40300.1 | 1e-109 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1322 | 38 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58120.1 | 3e-57 | bZIP family protein |
Publications ? help Back to Top | |||
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