PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G35190.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 729aa    MW: 79924.1 Da    PI: 7.8047
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G35190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-23154255199
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++F   ++L +gD v+F   + +++e
  OB01G35190.1 154 FCKTLTASDTSTHGGFSVPRRAAEDCfppldySLQRP-SQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSGFITKKKLISGDAVLFL--RGEDGE 247
                   99****************************9966654.569************************************************..449999 PP

                   .EEEEE-S CS
            B3  92 lvvkvfrk 99 
                   l+++v+r+
  OB01G35190.1 248 LRLGVRRA 255
                   *****996 PP
2Auxin_resp95.11.1e-31280364182
    Auxin_resp   1 aahaastksvFevvYnP....rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                   +aha++ k++F+++YnP    r s+seF+++++k+++++++++svGmRfk+ +e+ed+serr +G+++g +++dp  W++SkW++L
  OB01G35190.1 280 VAHAVAVKNIFHIYYNPswtcRLSQSEFIIPYWKFMRSFSQPFSVGMRFKLIYENEDASERRRTGIIIGSREADP-MWHGSKWKCL 364
                   799**************7777789***************************************************.9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-38146260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-43151284IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-21152254No hitNo description
PfamPF023622.1E-21154255IPR003340B3 DNA binding domain
SMARTSM010193.4E-22154256IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14154256IPR003340B3 DNA binding domain
PfamPF065072.6E-25280364IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MVGIDLNTVE EEEEEDEAEG GTGTPPAPAK AGGGVCLELW HACAGPVAPL PRKGSAVVYL  60
PQGHLEHLGA GARPLATRPR CSARAQCVRD IDLTVCFRCA VQADAASDEV YAQVSLVVDN  120
EEAKRRMRER EHGAGCDGEG EDAVKRPARI PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF  180
PPLDYSLQRP SQELVAKDLH GTEWRFRHIY RGQPRRHLLT TGWSGFITKK KLISGDAVLF  240
LRGEDGELRL GVRRAAQLKN VTPFPALHNQ ISSTTSLSEV AHAVAVKNIF HIYYNPSWTC  300
RLSQSEFIIP YWKFMRSFSQ PFSVGMRFKL IYENEDASER RRTGIIIGSR EADPMWHGSK  360
WKCLVVKWDD DVECLRPNGV SPWEIELSGS ASGSHLSTPH SKRLKPCFPQ VNSDVLLPNG  420
SVSSDFAESA RFHKVLQGQE LLGLKNHGGT VNTASQATEA RNFQYTDERS CSINMSNNIL  480
GVPRLGVRTP SGNPGFSYHC LGSGESQRFQ EVLQGQEVFR PYQGGILSDD CIRGSGFRQP  540
DGNHASGAAL KWLAPQGCGQ HGITTPVLPQ ASSPSSVLMF PQTSSKMPGL EYIYGCLDRN  600
ENSRRFKVGP TQDIGRTDET LRLWPRRMSG KALDGCMGTE KLNSPVSGAE HESNNKCLNT  660
NGCKIFGISL TEKTQAGNEV DCGNASYHSR FQSLNSQMPK SLGSSCATVH EQRPVVGRVV  720
DISAVNTMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1013039410361Auxin response factor 1
4ldy_B1e-1013039410361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G35190.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1037760.0AK103776.1 Oryza sativa Japonica Group cDNA clone:J033143P19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644500.10.0PREDICTED: LOW QUALITY PROTEIN: auxin response factor 2-like
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLJ3L2R30.0J3L2R3_ORYBR; Auxin response factor
STRINGOB01G35190.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-143ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]