PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G34420.1 | ||||||||
Common Name | LOC102715153 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 298aa MW: 31469.7 Da PI: 4.3898 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.1e-20 | 96 | 146 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+++AeIrd + r r++lg+f+taeeAa+ +++a+ +l+g OB01G34420.1 96 TKFRGVRRRP-WGKFAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDNAAIQLRG 146 69********.**********88.....55*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.27E-30 | 96 | 156 | No hit | No description |
Pfam | PF00847 | 1.4E-12 | 96 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.024 | 97 | 154 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-30 | 97 | 155 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-37 | 97 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-22 | 97 | 156 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-10 | 98 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MSRSRTVRIF WDDPDLTDSS GEDEGCGGRR VGSMVRELPP APAPVVQAGF APAPAAAAPL 60 PEQCSGGDGE LGRRVVGGCS AGRRRLTKGG AGAPSTKFRG VRRRPWGKFA AEIRDPWRGV 120 RVWLGTFDTA EEAARVYDNA AIQLRGPSAT TNFSTSTNSA GAQDPAAVGY ESGAESSPAV 180 SSPTSVLRKV PSLSSLAEDK DDYEAGPCEP AAVGSGLTVL EELGELVPFE DAPVYGSSSF 240 WDFEPERGFL YAEPSSPETP WNAGATSSGA PWASPVQEND YFQDLRDLFP LNPLPAIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-23 | 90 | 158 | 7 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G34420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003294 | 0.0 | AP003294.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0694A04. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644464.1 | 0.0 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | J3L2I6 | 0.0 | J3L2I6_ORYBR; Uncharacterized protein | ||||
STRING | OB01G34420.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 7e-25 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Entrez Gene | 102715153 |