PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G32020.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 1430aa MW: 150007 Da PI: 3.8837

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G32020.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	36.8	6.7e-12	1334	1358	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr+lL+Y+rGA +V+C++C+t+ OB01G32020.1 1334 CGSCRVLLAYFRGADHVHCTCCQTM 1358 ***********************96 PP
2	zf-LSD1	44.4	2.7e-14	1372	1396	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GApsV+C+lC +V OB01G32020.1 1372 CGHCETLLMYPFGAPSVKCSLCLFV 1396 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	7.4E-13	1331	1361	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.3E-8	1334	1357	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	9.2E-9	1370	1397	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.2E-11	1372	1396	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 1430 aa Download sequence Send to blast
MASPACDPMG ADEGSHAAPE PPTPPLESGP EEFQQKQQPH PPRAIHPECV SSEHAELPSL 60 PPTSPAEITP TLPDVTDIDA VAGTPEKASG STAEMEVMDG TEIDALAGTP EETPGSMSAM 120 EAMDATEMDA VAGKPEESPG STVAMEVMDA TVIDAVAGMP EEAPGSTAAM EAAPGFLASL 180 LDQRSTEIDA VSGKPEESPG STVAMEVMDA TVIDAVAGMP EEAPGSTAAM EAMDATEIDA 240 VSGRPEEAPG STAAMEVTDV TKIDAVAGTP EEAPGPTVAM EVTYGETGSA AVSVSLVLDS 300 GEEVSLQKSM QKPSSPTVNT EPESMERPCP PTMNTEPCSP EMVSLGFQLQ QPHSPATAHP 360 EYDGSEHVEL PLRPTSLAKT AHTLADAADI DVVPGTTEEA LGSTAAMEVT DSAKIDVLTG 420 IPEEAPSSTL AMEVMYGETD IVAVSVSPLL ENGEEGSLQV SMQRPSSPAM KPESMERPCP 480 PTVDTKPCSP EMAPLGFQMP QQQQQHPPAT APSECDSSEH AELPLPPTSL AEITHTLPNA 540 ADINAVAGTP EDLGSMTTME VMHAAKIDVV AGMPEEAPNS TLAMEVIYRE TDTAAISVSP 600 VLDSGKEGSL QESMEKPSYP MMDPEPESIQ RSSSPTVDTE PSLPEMAPPG FQQQQQQSHL 660 PSTTPPECDS LEHAELPLPP TSPAEITHTL RDAAEIDVIA GTPEEAPNSA LAVMVTYRKT 720 DTSEISVPPV VENAEEGPLQ ESMQRPSSPT MVTKPCSPDM APPGFENCKA SWLPVPPPTP 780 PGQSMPSLPV AAAPKGLVVM PEEVVESVPS LEALDAEKPS SIMQAEPSSP DMPPPGFENF 840 KSSWLPLPTT PPVSTTEVLP DVVVTKAVEA PIEEAFGPLP ALELMNMDTD TAHNMFPTEG 900 SEGLLQKPLL KLPSPVAQSE PYSQDEMAPP GFENFKSSSE PCSVEEIARP VFDNFKSSSE 960 PCSPVEMAPP GFENFKSSWP PHPSLPQTAY MSPDAATRDA LAATVEEVTG PPPALEAMDV 1020 DVGAIHPPPP PFDSGLESLQ EPLPRVPSPI MQETSCSPDR APPGFETYKS SQLLLPSPSL 1080 AQTTNDQQDQ LVTKPISVIE EAPQPLHSVE LMGANMDTAP PSLLSSESGP DGPFPQQFPC 1140 LPSPAEKGTT TCLPDMVHSG SDDLESSQLL PPPVVISTIQ TPDGLADAPA VDRVAVASEE 1200 SPQRPLVSRG MEDGTVPIQS SPLENASEGS LPQVESQVHS PTAQAVDSLL DAPGSKSVAV 1260 ASEMSQPPQA ANTDFVSTTA MQPQSKGIVD ESLQLPQHPA SSTAHAAPCL QDSVLLVPPP 1320 PSPFLNKEIG QMVCGSCRVL LAYFRGADHV HCTCCQTMNL VLEAHEVGNV HCGHCETLLM 1380 YPFGAPSVKC SLCLFVTEIG ERNVRPRLSI EQAVPPHPSE VQKSELTHKT

Sequence ? help Back to Top

Protein Sequence Length: 1430 aa Download sequence Send to blast

MASPACDPMG ADEGSHAAPE PPTPPLESGP EEFQQKQQPH PPRAIHPECV SSEHAELPSL  60
PPTSPAEITP TLPDVTDIDA VAGTPEKASG STAEMEVMDG TEIDALAGTP EETPGSMSAM  120
EAMDATEMDA VAGKPEESPG STVAMEVMDA TVIDAVAGMP EEAPGSTAAM EAAPGFLASL  180
LDQRSTEIDA VSGKPEESPG STVAMEVMDA TVIDAVAGMP EEAPGSTAAM EAMDATEIDA  240
VSGRPEEAPG STAAMEVTDV TKIDAVAGTP EEAPGPTVAM EVTYGETGSA AVSVSLVLDS  300
GEEVSLQKSM QKPSSPTVNT EPESMERPCP PTMNTEPCSP EMVSLGFQLQ QPHSPATAHP  360
EYDGSEHVEL PLRPTSLAKT AHTLADAADI DVVPGTTEEA LGSTAAMEVT DSAKIDVLTG  420
IPEEAPSSTL AMEVMYGETD IVAVSVSPLL ENGEEGSLQV SMQRPSSPAM KPESMERPCP  480
PTVDTKPCSP EMAPLGFQMP QQQQQHPPAT APSECDSSEH AELPLPPTSL AEITHTLPNA  540
ADINAVAGTP EDLGSMTTME VMHAAKIDVV AGMPEEAPNS TLAMEVIYRE TDTAAISVSP  600
VLDSGKEGSL QESMEKPSYP MMDPEPESIQ RSSSPTVDTE PSLPEMAPPG FQQQQQQSHL  660
PSTTPPECDS LEHAELPLPP TSPAEITHTL RDAAEIDVIA GTPEEAPNSA LAVMVTYRKT  720
DTSEISVPPV VENAEEGPLQ ESMQRPSSPT MVTKPCSPDM APPGFENCKA SWLPVPPPTP  780
PGQSMPSLPV AAAPKGLVVM PEEVVESVPS LEALDAEKPS SIMQAEPSSP DMPPPGFENF  840
KSSWLPLPTT PPVSTTEVLP DVVVTKAVEA PIEEAFGPLP ALELMNMDTD TAHNMFPTEG  900
SEGLLQKPLL KLPSPVAQSE PYSQDEMAPP GFENFKSSSE PCSVEEIARP VFDNFKSSSE  960
PCSPVEMAPP GFENFKSSWP PHPSLPQTAY MSPDAATRDA LAATVEEVTG PPPALEAMDV  1020
DVGAIHPPPP PFDSGLESLQ EPLPRVPSPI MQETSCSPDR APPGFETYKS SQLLLPSPSL  1080
AQTTNDQQDQ LVTKPISVIE EAPQPLHSVE LMGANMDTAP PSLLSSESGP DGPFPQQFPC  1140
LPSPAEKGTT TCLPDMVHSG SDDLESSQLL PPPVVISTIQ TPDGLADAPA VDRVAVASEE  1200
SPQRPLVSRG MEDGTVPIQS SPLENASEGS LPQVESQVHS PTAQAVDSLL DAPGSKSVAV  1260
ASEMSQPPQA ANTDFVSTTA MQPQSKGIVD ESLQLPQHPA SSTAHAAPCL QDSVLLVPPP  1320
PSPFLNKEIG QMVCGSCRVL LAYFRGADHV HCTCCQTMNL VLEAHEVGNV HCGHCETLLM  1380
YPFGAPSVKC SLCLFVTEIG ERNVRPRLSI EQAVPPHPSE VQKSELTHKT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G32020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644363.2	0.0	PREDICTED: nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
TrEMBL	J3L1U6	0.0	J3L1U6_ORYBR; Uncharacterized protein
STRING	OB01G32020.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13395	25	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	6e-32	lsd one like 2