PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G30110.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 306aa MW: 33091.5 Da PI: 6.6399

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G30110.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.5	2.5e-13	105	151	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h ErrRR+++N+ f L++l+P+ + K++Ka+iL +++ Y+k+L+ OB01G30110.1 105 NHVVSERRRREKLNEMFLILKSLIPSiN------KVDKASILAETIAYLKELE 151 79999*******************77......**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.126	101	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.46E-14	104	155	No hit	No description
SuperFamily	SSF47459	5.23E-18	104	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-18	105	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-10	105	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-15	107	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEIDEMIYSL IGDCQEDGLD DADIFVVPSL VEDDNNGGGG GGWLLRRVAA SPASCFVAWK 60 RTGSDEEEAA VVAGESPGQK LLKKAVGGGA WMKNNGRGPG NSMKNHVVSE RRRREKLNEM 120 FLILKSLIPS INKVDKASIL AETIAYLKEL ERRVQELESS RQGVPRDEPD IAGNKKQASA 180 GAKAKRKKPP SSEVAGAGGG AAREHHHHSW VVHSEEEEEG AATASDVHVM IVTEKEQLQV 240 EVRCRWKELV MTRVFDAIKS LRLDVLSVQA SAPDGLLRLN IRAKYASSAA VPPGVISEAL 300 RTAVGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	114	ERRRRE
2	110	115	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G30110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015689085.1	0.0	PREDICTED: anthocyanin regulatory Lc protein-like
Swissprot	P13027	9e-62	ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBL	J3L1A5	0.0	J3L1A5_ORYBR; Uncharacterized protein
STRING	OB01G30110.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	9e-35	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Perrot GH,Cone KC Nucleotide sequence of the maize R-S gene. Nucleic Acids Res., 1989. 17(19): p. 8003 [PMID:2798145] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]