PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G29920.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 646aa    MW: 69256.8 Da    PI: 4.9465
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G29920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.6e-06410432225
                   -S---SGGGGTS--TTTTT-SS-S CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                   k ++C +far G C  Gd C++ H
  OB01G29920.1 410 KSKPCTHFAR-GSCLKGDDCPYDH 432
                   6789******.************* PP
2zf-CCCH26.31.2e-08438459526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   +C++f ++G C +Gd+CkF+H+
  OB01G29920.1 438 PCHNFIENGMCIRGDKCKFSHV 459
                   7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.957379406IPR000571Zinc finger, CCCH-type
SMARTSM003560.012380405IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5380404IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4407433IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281408435IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5408434IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5410433IPR000571Zinc finger, CCCH-type
SMARTSM003560.077436460IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6437470IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4438458IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.422438461IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5438459IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MEEPALAPPA APPGSLAAAP PAPEVEAALG KPTPHETPLM SGFPDGAANS TTDPGVVPHG  60
TPESGVQGVE RVESVEELVL TGSTSAKAGD GGEELGAGAT LMGEDDALRS MQACLDGEDN  120
ELVNEMMGND DDLLQLDAMM TNFSGLIDDA SDANAGISSA PSCGVTGGKL QSDSRVAEEV  180
KELGAGIGND RYQVKESGDG IGNDTSLISS DHVSIDGGDL DGGDFEEGEI EDDMQNLDVD  240
DSGNSELEDK DAKGEELKED FVSRKMGENG SCSYDVRSHN LHLIPQKGDV NFVMNTQCNS  300
KDDSQMHGAR AQAVSYDEVV DWNETPLPDD KAPKHGNKRK RLLTEERKAK KTKNKRIKRA  360
LQREAEGVKR LKLQPVIKPK VVQDCRFYLL GKCQQGNMCK FSHDTTPLTK SKPCTHFARG  420
SCLKGDDCPY DHELSKYPCH NFIENGMCIR GDKCKFSHVI TTAEGPLTPD AKKSNASSVP  480
EKVNYRDQTS SQKTSTVYSG EPSAPTEHRS ILKNLAGISG NAQKAPGRIP KGIQFLHFNK  540
ASSDSHILYQ DVLSTEKHKN PIGGQHQNFG KPLPAEGEKI AKHNGLRSAP LLDENSSSKQ  600
ANLHACSEPK KNSLPTTASV PSLASTENEV SEASRILQEF LFSPGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G29920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2420490.0AK242049.1 Oryza sativa Japonica Group cDNA, clone: J075122B22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688215.10.0PREDICTED: zinc finger CCCH domain-containing protein 7 isoform X2
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLJ3L1860.0J3L186_ORYBR; Uncharacterized protein
STRINGOB01G29920.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.23e-07C3H family protein
Publications ? help Back to Top
  1. Noller B,Fischer I
    Photodissociation dynamics of the 2-propyl radical, C3H7.
    J Chem Phys, 2007. 126(14): p. 144302
    [PMID:17444707]
  2. Ali MA,Dillstrom VT,Lai JY,Violi A
    Ab initio investigation of the thermal decomposition of n-butylcyclohexane.
    J Phys Chem A, 2014. 118(6): p. 1067-76
    [PMID:24344976]