PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G22230.1 | ||||||||
Common Name | LOC102722711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 33626.9 Da PI: 5.0701 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.7 | 3.5e-15 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W +eEd l+ v+ +G g+W+ +ar g++Rt+k+c++rw++yl OB01G22230.1 24 RGPWAAEEDAVLAGHVAAHGEGRWNEVARAAGLRRTGKSCRLRWLNYL 71 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.5e-17 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ OB01G22230.1 77 RGDFTPQEQLLILELHSRWGNR-WSRIAQHLP-GRTDNEIKNYWRT 120 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.925 | 19 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-29 | 22 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-11 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 24 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-21 | 25 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.42E-8 | 26 | 71 | No hit | No description |
PROSITE profile | PS51294 | 23.756 | 72 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-15 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-16 | 77 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 79 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.12E-11 | 80 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MDARCGWTAA AAEMAEELED GFRRGPWAAE EDAVLAGHVA AHGEGRWNEV ARAAGLRRTG 60 KSCRLRWLNY LRPDVRRGDF TPQEQLLILE LHSRWGNRWS RIAQHLPGRT DNEIKNYWRT 120 RVQKHAKQLG CDVNSGQFRD VMRHLWMPRL VERIQAAAAA ATALATSPDE HAAPAVAHGD 180 MCHSPDPSTT TMSSTGTSAG SSSTSSSITS TSVPRGEQFP SSTNQEHLAM ASVTAVAAAD 240 WSSEQYGSAS TGFGADDMFE GSWSELLARA YDDDGADSSL LPDFQTAETG DNWWSLEDDI 300 WSQRPY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 18 | 118 | 21 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G22230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241615 | 0.0 | AK241615.1 Oryza sativa Japonica Group cDNA, clone: J065186D02, full insert sequence. | |||
GenBank | AP002883 | 0.0 | AP002883.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0487H02. | |||
GenBank | AP003140 | 0.0 | AP003140.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0025P13. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644098.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | J3KZ17 | 0.0 | J3KZ17_ORYBR; Uncharacterized protein | ||||
STRING | OB01G22230.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 4e-77 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Entrez Gene | 102722711 |