PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G21750.1
Common NameLOC102711308
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 281aa    MW: 30771.3 Da    PI: 6.2492
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G21750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.75.5e-171050242
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                  ri n+  r  tf kRr g+ KKA+EL +LCd++ +++++++
  OB01G21750.1 10 RIPNDATRRATFKKRRRGLVKKASELATLCDVDTCLVVYGE 50
                  899************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.021150IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-21160IPR002100Transcription factor, MADS-box
CDDcd002661.67E-32285No hitNo description
SuperFamilySSF554553.66E-24395IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-11323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-171050IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MARKKIILDR IPNDATRRAT FKKRRRGLVK KASELATLCD VDTCLVVYGE GETEPEVWPS  60
MEGAKAVLEH FKALPEMDQC KKMMNQEDFL RQRITKLMEQ IRKMGRENHE RETTLLLHQA  120
LSGHLGNYNG ITVEQLTSLD CIVSTKLKVV SDCLAELRAQ NDVLVSPLPV LLPLSPAPPS  180
MAAPVMAARH AFATSAILGP PPGFEGININ QVDHDQNSWL MDVAKNGGDL GALVFSGFVG  240
TSNGASTSTS SLDMNVFSTN PDMAGYGWSW DDSVGLSFPP M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKIILDRIPNDATRRATFKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G21750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645781.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLJ3KYW90.0J3KYW9_ORYBR; Uncharacterized protein
STRINGOB01G21750.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-28AGAMOUS-like 80