PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G19140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 104aa MW: 10841.5 Da PI: 9.617 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 49.5 | 1.2e-15 | 10 | 50 | 1 | 41 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasn 41 aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG + OB01G19140.1 10 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHLVFGGAA 50 7************************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.355 | 9 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-13 | 10 | 51 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MTGGGSGAGA CAVCKHQRRK CEPNCELAAY FPANRMNDFR ALHLVFGGAA AAAAVAPQCR 60 GPAQLSEGRV TLGTRATRGD MPTANGLWVK ALVRSSASEM NFMV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G19140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108724 | 5e-64 | AK108724.1 Oryza sativa Japonica Group cDNA clone:002-150-C08, full insert sequence. | |||
GenBank | AP003201 | 5e-64 | AP003201.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1066G12. | |||
GenBank | AP014957 | 5e-64 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 5e-64 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J3KY58 | 5e-70 | J3KY58_ORYBR; Uncharacterized protein | ||||
STRING | OB01G19140.1 | 8e-71 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13044 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 2e-09 | LOB domain-containing protein 2 |