PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G18980.1
Common NameLOC102706342
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 301aa    MW: 31565.8 Da    PI: 4.4428
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G18980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.82.9e-24198247151
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                   k +++WtpeLH+rFv+aveqL G++kA+P++ilelm++++Lt+++++SHLQ
  OB01G18980.1 198 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIECLTRHNIASHLQ 247
                   5689*****************.***************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.793195254IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-22196247IPR009057Homeodomain-like
SuperFamilySSF466893.76E-15196253IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-23198247IPR006447Myb domain, plants
PfamPF002492.8E-6201248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MLEVSTLRSP KADQRAGVGI GGGHVGFAAP SADVDEDAFI VDDSLLEYID FSCCDVPFFH  60
AEDGDILPDL EVDPTELLAE FASSPDEPQP TASPAAGGQA AGANEDVKED GAASGDEPSP  120
PRGKKEDDEL GGSSSHEEKD AKIGGDEVLS AVTTDDCSAA AVAAGCDAKS SSPSAEGHSK  180
RKPSSSSSSA KNSHGKRKVK VDWTPELHRR FVQAVEQLGI DKAVPSRILE LMGIECLTRH  240
NIASHLQDKQ ERLKDKDFSK INVAYCSCVQ QMLAKDGHNG CMQACVSAAI AEAGPETAMS  300
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-14195254261ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G18980.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8340431e-125CT834043.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI203A14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015699268.10.0PREDICTED: probable transcription factor GLK2
SwissprotQ5NAN51e-100GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLJ3KY420.0J3KY42_ORYBR; Uncharacterized protein
STRINGOB01G18980.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.17e-28GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]