PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G17220.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 547aa    MW: 59554.6 Da    PI: 4.4123
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G17220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF404.9e-131551339
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                  +++++ r +tf kRrng++K A+ LS+L++a vav++
  OB01G17220.1 15 VDDERERDITFFKRRNGLFKGASDLSILTGASVAVVL 51
                  578999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-8165IPR002100Transcription factor, MADS-box
CDDcd002661.09E-15882No hitNo description
SuperFamilySSF554551.44E-121174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.41551IPR002100Transcription factor, MADS-box
PfamPF003192.4E-151660IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MPRARRARRT GSAYVDDERE RDITFFKRRN GLFKGASDLS ILTGASVAVV LEDQNRGKFH  60
SLGTPLVQTV VDAALSRDME PTEPFAGEQL KGRLVPLERE LARLKDVAAI KEEETRASKA  120
RYNEAKKEEE DDDERDALLK KLFFSKQYNL SLDEMNELYG TLVQIQKELR VRLPPLRRRA  180
GESSIQGSSV PPPPPPPPPP PQQQQLPQWP NLLGPHNQLL PVEPPPFVAD QAPPPPPPAA  240
GGSLWIPELP PPPPAGSPWA RVLPLQPPRF SEMEPIFHAS QQAPAQDNTQ LAPLPPVAAP  300
LPQHPFLLSD HAPALGPVPA SVPLQMPVEA HFPLESPLFH FHETFLVPEQ AQGLAPLPAP  360
LQMPMEAHMP MEDPLFQEPF LVPDQAPVLS PLPMPLQMPV EAHMPLEAPW FQEPIIVPDQ  420
APMLSPLPAP LQMPVDAHFP LAAEAVQQQT QGYENYDFMF DNAGLSQPLV AGAGNDGDAA  480
MGNDNPLGYQ QWAASPLYDG QIYFGTGVDD MGIIVGDHGG VLEADMVEGG HASSSGGGDD  540
IAGGAWF
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G17220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636878.10.0pollen-specific leucine-rich repeat extensin-like protein 2
TrEMBLJ3KXL60.0J3KXL6_ORYBR; Uncharacterized protein
STRINGOB01G17220.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP155501117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-09AGAMOUS-like 61