PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G15840.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 384aa    MW: 40666.7 Da    PI: 7.3936
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G15840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-08124144526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    C++f++ G Ck+Gd C +aHg
  OB01G15840.1 124 ACPDFRK-GGCKRGDACEYAHG 144
                   7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103120146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5123146IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-6124144IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258154178IPR000571Zinc finger, CCCH-type
SMARTSM0035612154177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MMMMGEGVSG VPPWSHLPVS GVDVLGGGGG GAGGGDEMTP YLIAALREYL PSNDVGVGAD  60
DEEEAAAMAA AVDAYACDEF RMYEFKVRRC ARGRSHDWTE CPFAHPGEKA RRRDPRKYHY  120
SGTACPDFRK GGCKRGDACE YAHGVFECWL HPARYRTQPC KDGTACRRRV CFFAHTPDQL  180
RVLPAQQSSP RSVASSPLAE SYDGSPLRRQ AFESYLTKTI MSSSPTSTLM SPPKSPPSES  240
PPLSPDGAAA IRRGSWPGVG SPVNDVLASF RQLRLSKVKS SPSGGWSYPA SSTTAAAGPP  300
PPPPPRAPPG GGPPASSFMA NLEPIDMGLI GEEEPVQRVE SGRALREKVF ERLSRDGAVS  360
GGAGATTATA GVGPDVAWVS DLIN
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G15840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1007700.0AK100770.1 Oryza sativa Japonica Group cDNA clone:J023119N23, full insert sequence.
GenBankAP0027460.0AP002746.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671B11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankHQ8588370.0HQ858837.1 Oryza sativa Japonica Group isolate UT1347 C3H transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688255.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 2-like
SwissprotQ9FU270.0C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLJ3KX780.0J3KX78_ORYBR; Uncharacterized protein
STRINGOB01G15840.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-79C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]