PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G15530.1
Common NameLOC102717947
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 192aa    MW: 21016 Da    PI: 10.71
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G15530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY506.1e-16107135129
                   ---SS-EEEEEEE--TT-SS-EEEEEE-S CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCts 29 
                   ldDg++WrKYG+K vk+s++pr+YYrC+ 
  OB01G15530.1 107 LDDGFKWRKYGKKAVKSSPNPRNYYRCSR 135
                   59*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-15100135IPR003657WRKY domain
PROSITE profilePS5081116.409102134IPR003657WRKY domain
SuperFamilySSF1182901.44E-13103135IPR003657WRKY domain
SMARTSM007741.3E-6107145IPR003657WRKY domain
PfamPF031061.6E-11108136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAASLGLCHD TSYAAYSCPS LCFPPQPLMA DDDGAAARGG FFFPPASFGD FLELGHPEYS  60
LPPPPQQQQA VIGGVGEYYG VPSPSSSTMA TTSRIGFRTR SEEVEVLDDG FKWRKYGKKA  120
VKSSPNPRNY YRCSRRPHPR PPRPRRPPVP FRRRRAGLDL SSSGAASLLG AAASRRRRRR  180
ALVGIVVLII HS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179RRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G15530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1095788e-58AK109578.1 Oryza sativa Japonica Group cDNA clone:002-135-F06, full insert sequence.
GenBankAP0024868e-58AP002486.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F03.
GenBankAP0149578e-58AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY3418548e-58AY341854.1 Oryza sativa (japonica cultivar-group) WRKY13 mRNA, complete cds.
GenBankHQ8588268e-58HQ858826.1 Oryza sativa Japonica Group isolate UT1324 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645582.11e-136PREDICTED: WRKY transcription factor SUSIBA2-like
TrEMBLJ3KX471e-135J3KX47_ORYBR; Uncharacterized protein
STRINGOB01G15530.11e-136(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-18WRKY DNA-binding protein 50