PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G13930.1 | ||||||||
Common Name | LOC102701762 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 274aa MW: 30594.1 Da PI: 5.5118 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.4e-19 | 75 | 124 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r +r +lg+f ta eAa a+++a+++++g OB01G13930.1 75 AYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGSFPTALEAAHAYDEAARAMYG 124 59****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.8E-13 | 74 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 75 | 133 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.5E-32 | 75 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.825 | 75 | 132 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.07E-30 | 76 | 134 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.9E-31 | 76 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-9 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-9 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MERGEGRKGD CSAQVRKKRT RRKSDGPDSI AETIKWWKEQ NEKLQEESSS RKAPAKGSKK 60 GCMAGKGGPE NSNCAYRGVR QRTWGKWVAE IREPNRGRRL WLGSFPTALE AAHAYDEAAR 120 AMYGPTARVN FADNCADTNS GCTSAPSLMM SNGPTTVRSD EKDELESPPF VVVNGPTVVL 180 HRSGKKDALE CVIPDQQLKK EVSNDLRSTC EEQETMDACQ SEGSVLHKEV NVSYDYFNVH 240 EVVEMIIVEL SADQKMEVHE EYQEGDDGFS LFSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-14 | 76 | 131 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G13930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF300971 | 0.0 | AF300971.2 Oryza sativa DRE binding protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006643786.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2A | ||||
Swissprot | A2WL19 | 1e-177 | DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A | ||||
TrEMBL | J3KWN7 | 0.0 | J3KWN7_ORYBR; Uncharacterized protein | ||||
STRING | OB01G13930.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7315 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 6e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102701762 |