PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G11750.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 369aa    MW: 39899.8 Da    PI: 7.0788
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G11750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-174289148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
     OB01G11750.1 42 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 89
                     89********************************************97 PP
2Myb_DNA-binding53.55.4e-1795138146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
     OB01G11750.1  95 RGNLTPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 138
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8853789IPR017930Myb domain
SuperFamilySSF466897.11E-3139136IPR009057Homeodomain-like
SMARTSM007171.2E-134191IPR001005SANT/Myb domain
PfamPF002496.4E-154289IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-234396IPR009057Homeodomain-like
CDDcd001674.64E-114489No hitNo description
PROSITE profilePS5129426.28190144IPR017930Myb domain
SMARTSM007171.5E-1594142IPR001005SANT/Myb domain
PfamPF002497.3E-1695138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-2497143IPR009057Homeodomain-like
CDDcd001671.30E-1299138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSQRRGAGPM GGLGAAAAAA SAVMSKQQQQ QLEADEMMEL RRGPWTLEED NLLMNYIACH  60
GEGRWNLLAR CSGLKRTGKS CRLRWLNYLK PDIKRGNLTP EEQLLILELH SKWGNRWSRI  120
AQHLPGRTDN EIKNYWRTRV QKQARQLKVD ANSTVFRDAV RCYWMPRLLE KMASTTVHQA  180
AASAADPPPP PPLHHHLAAM AASSSSPFDT HLQHADTCGG GGGVPPNVYH HHVQVHPIDP  240
SPSTSTSAGS TAALPPVPCF SELRWDQLQS SGELDGAAGV FDSALGSLGL DGLDLGSPAE  300
YYSDSTLLDY LNSSCTGSAM MTMMTASGHG GGYNYCGGAM DGDHHGGSTW RADELCQAAR  360
KLGEWGGGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-26391431104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G11750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074240.0AK107424.1 Oryza sativa Japonica Group cDNA clone:002-127-F10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643700.10.0PREDICTED: transcription repressor MYB4-like
TrEMBLJ3KW190.0J3KW19_ORYBR; Uncharacterized protein
STRINGOB01G11750.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-79myb domain protein 62