PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB0054G10030.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 817aa    MW: 92587.8 Da    PI: 8.9992
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB0054G10030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.54e-1754137190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY++YA++vGF v++++s+ s ++g++   +++C k g+++ e k      r+ra++ t+C ak++vk++ d+  +v+   l+HnH+++
  OB0054G10030.1  54 RFYRRYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPAKIRVKLWGDKLLHVELAILDHNHPVS 137
                     5*****************9999.6677****************9988.....99*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1554138IPR004330FAR1 DNA binding domain
PfamPF105514.0E-30257350IPR018289MULE transposase domain
PfamPF044342.7E-5544576IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.619544580IPR007527Zinc finger, SWIM-type
SMARTSM005751.9E-5555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MMEAEEAFPS QRNPRRARRR DLNALDPSIE ESDGEDIGVP EVGMVFNNHM EVNRFYRRYA  60
RRVGFGVSVR RSSFSQEGTC LYLELMCCKG GRPRYEPKFR KRASSTTNCP AKIRVKLWGD  120
KLLHVELAIL DHNHPVSPAM ARFLNSYKQL SGPAKRRLRM GGPGAMPVEE PSKMPVDKLG  180
ALEELLFGES KHHSFVERGR LKFQPGDSEA LRLFFTRMQA KNANFFNVID LDDEGGVRNV  240
FWADARSRSM YEFYNDVVTL DTSYVVGKYD MPLATFIGVN HHGQSVLLGC GLLSDETAET  300
YSWLFKAWIA CMSGSLPKAI ITGHCRGIQS AIAEVIPGGH HRICLFHIMR KATERLGSLS  360
EYTAISKAFQ KAVYDSLTVD EFEGNWNALI TYNALQGNDW LRSLYECRYS WVPVFLKDTF  420
WAGMSATQRN ENIIPFFDGY VDLKTTLKHF LGKYEMALQS KYEKEAQADF ETFHKQRPPV  480
SKFYMEEQLS KVYTHNIFKK FQDEIEAIMY CHVSLVNVDG LISTFNVKEW IFLEDGKRTM  540
SKIFTVTYNT DKNDFTCICG GFQFNGILCR HSLSVLKFQQ VREIPPQYVL DRWKKDFRQL  600
HVMGRPSSDV VPNNRVDRYD YLSMRCLQLV DSAVLSDKYR LALRLVREME KFMLNSNTHD  660
DTQPRIRSRI PKANKPNTMA GQNLVNVGSY NGNDGPKATI EASLTQGLDV QKGGAEKGIV  720
PAGYIGLPAN VQQFVGCQTA IRPSIVYMVP SGVDPQAFGN GVLMPVMYQQ MFQVPQQPNG  780
TVQDTSANGK RKRPRAQKLT ETSEQSNGTP APGPASG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB0054G10030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0735270.0AK073527.1 Oryza sativa Japonica Group cDNA clone:J033046M02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664904.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X2
TrEMBLJ3KUH90.0J3KUH9_ORYBR; Uncharacterized protein
STRINGOB0054G10030.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-138FAR1-related sequence 6