PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART12G19610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 376aa MW: 41510.2 Da PI: 8.105 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148.5 | 3.5e-46 | 37 | 192 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....................kvkaeekew.yfFskrdkkyatgkr 73 pGfrFhPtd+elv +yL++kve+k++++ ++ike+diyk++PwdLpk +++a eke+ yfF+ r +ky+++ r OBART12G19610.1 37 FPGFRFHPTDQELVGFYLTRKVEKKPFSI-DIIKEIDIYKHDPWDLPKvshgavalqgssssssssslsTAAAAEKECgYFFCLRGRKYRNSIR 129 69***************************.99***************7799*******999999888764444677878*************** PP NAM 74 knratksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +nr+t sg+Wkatg dk+++s+ g +glkk+Lv+y+g+a kg+ktdW+mhe+rl OBART12G19610.1 130 PNRVTGSGFWKATGIDKPIYSSslaaaaagAGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 192 *********************8777666655555***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 47.864 | 36 | 217 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-47 | 36 | 217 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-23 | 38 | 192 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MEEEKRLERI IKEIDSSPIS PGGSGAALLA EDDDLVFPGF RFHPTDQELV GFYLTRKVEK 60 KPFSIDIIKE IDIYKHDPWD LPKVSHGAVA LQGSSSSSSS SSLSTAAAAE KECGYFFCLR 120 GRKYRNSIRP NRVTGSGFWK ATGIDKPIYS SSLAAAAAGA GDCIGLKKSL VYYRGSAGKG 180 TKTDWMMHEF RLPSSISDSD HLQDASETWT ICRIFKRSMT YTKGRAAAAA SMNKRISHQL 240 QHIHHHQQQF YYHEVVHDHG HHHRRHLQQY AGRASMAAAA ANIVDVIDHS SDAETTTRSH 300 SHSQSHLVAD IRHRQSPFML DFHAGTAVSS SSTAAAGWSE VMSFSRDGGS SSGSSWDELG 360 RIMDISTNSA NNNYYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-43 | 38 | 217 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-43 | 38 | 217 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-43 | 38 | 217 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-43 | 38 | 217 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-43 | 38 | 217 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-43 | 38 | 217 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-43 | 38 | 217 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-43 | 38 | 217 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-43 | 38 | 217 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-43 | 38 | 217 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-43 | 38 | 217 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-43 | 38 | 217 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-43 | 38 | 217 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-43 | 38 | 217 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619497.1 | 0.0 | NAC domain-containing protein 41 isoform X2 | ||||
Swissprot | Q9SK55 | 1e-74 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A0D3HX11 | 0.0 | A0A0D3HX11_9ORYZ; Uncharacterized protein | ||||
STRING | OBART12G19610.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 6e-75 | NAC domain containing protein 42 |