PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G19190.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 212aa    MW: 23371.4 Da    PI: 8.8168
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G19190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY224.92.3e-6961825170
            YABBY   5 ssseqvCyvqCnfCntila.....vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee......lleelkveeenlksnve 87 
                        +eqvCyv+CnfCntila     vsvP +s++++vtvrCGhCt+llsvnl+  ++  +a ++ +++  +e        ++    e  ++   +
  OBART12G19190.1   6 APAEQVCYVHCNFCNTILAfsidtVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHHLQEsglsgcFRDQSSYPEFGFSAASS 99 
                      5689**************76666689*****************************999986554444444447665545555555555666666 PP

            YABBY  88 keesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      +++      ++ ++s +++++  ++    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  OBART12G19190.1 100 SSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 182
                      66666666677778888888887777789****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.2E-717182IPR006780YABBY protein
SuperFamilySSF470953.14E-8127176IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.5E-5129176IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSAQIAPAEQ VCYVHCNFCN TILAFSIDTV SVPGNSMLNI VTVRCGHCTN LLSVNLRGLM  60
HSAPALQDHH HHHLQESGLS GCFRDQSSYP EFGFSAASSS SKLRLPPAAA AMVSYSQQNQ  120
QLEQALHARP PEKRQRVPSA YNRFIKEEIR RIKANNPDIS HREAFSTAAK NWAHYPNIHF  180
GLSPGHEGGK KLVDVDPIPT APSSKKIQGF YS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740180.0AB274018.1 Oryza sativa Japonica Group OsYABBY6 mRNA for OsYABBY6 protein, complete cds.
GenBankAK1049180.0AK104918.1 Oryza sativa Japonica Group cDNA clone:001-047-F07, full insert sequence.
GenBankCT8291390.0CT829139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051K22, full insert sequence.
GenBankFJ9401950.0FJ940195.1 Oryza sativa Japonica Group clone KCS385G10 YABBY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618575.11e-141protein YABBY 6
SwissprotQ2QM171e-142YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A0D3HWV91e-157A0A0D3HWV9_9ORYZ; Uncharacterized protein
STRINGOBART12G19190.11e-158(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.26e-57YABBY family protein