PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G17560.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 366aa    MW: 41865.1 Da    PI: 6.3939
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G17560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-14381201498
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE- CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfr 98 
                      + +++p k a++++g+ ++     l+ +sg++W v +  +k  ++ +l +GW++F+ka++L+e+D + F+ +gr   +f++ v +f+
  OBART12G17560.1  38 HGISIPEKVADRFSGQITK--GFNLKAPSGETWCVSI--EKVADELILMSGWEDFAKAHELQENDLLFFTCNGRcnGSFSFDVLIFD 120
                      459**********888555..59999***********..*******************************99874455666666665 PP
2B342.71e-13260356198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                      f++vl  +  +++g+l++p  fa++h  +  +s+++ l+   + ++W vk+ +  + +++  +  W +F ++n+L+eg +++F+l++  ++ ++
  OBART12G17560.1 260 FVTVLQAPQIHRKGLLIVPSGFAADHLDS--RSQEILLMRpNKKEKWYVKYYHASTTRGFNCQ-RWIKFIRENRLREGYICIFELMKGaRRVTM 350
                      788888999999**************544..44566666637779******556666666666.9*******************9977799999 PP

                      EEEEE- CS
               B3  93 vvkvfr 98 
                      +v+v+ 
  OBART12G17560.1 351 TVHVIG 356
                      999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-1721124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.89925122IPR003340B3 DNA binding domain
CDDcd100178.82E-1427120No hitNo description
SMARTSM010193.0E-528122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-1628124IPR015300DNA-binding pseudobarrel domain
PfamPF023625.1E-1237117IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-18253356IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-17253356IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-14258355No hitNo description
PROSITE profilePS5086311.899260358IPR003340B3 DNA binding domain
PfamPF023622.1E-12260356IPR003340B3 DNA binding domain
SMARTSM010197.6E-10260358IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGEKGCESCR EWQEHCYREH MDVSRIRFFR LMTGDFAHGI SIPEKVADRF SGQITKGFNL  60
KAPSGETWCV SIEKVADELI LMSGWEDFAK AHELQENDLL FFTCNGRCNG SFSFDVLIFD  120
ASGCEKVSCF FIGKKNSIGG QTQNAEQYHL SDSEDTSTPS TFLVGSPHKA STSKKLNGKT  180
KTNPNKDDPF STGKEPEDPN SSRSHVKHEM IEEEKSDDDD EHADYEHADY YYSRFANYLT  240
GEEREEIFSL VSLQPGNPVF VTVLQAPQIH RKGLLIVPSG FAADHLDSRS QEILLMRPNK  300
KEKWYVKYYH ASTTRGFNCQ RWIKFIRENR LREGYICIFE LMKGARRVTM TVHVIGKVDD  360
RFVLLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8317970.0AL831797.4 Oryza sativa chromosome 12, . BAC OSJNBa0010M16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878095.10.0B3 domain-containing protein Os12g0592300 isoform X1
SwissprotQ2QMT20.0Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A0D3HWA70.0A0A0D3HWA7_9ORYZ; Uncharacterized protein
STRINGOBART12G17560.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-23B3 family protein