PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G17530.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1535aa    MW: 175181 Da    PI: 9.3526
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G17530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3382.9e-121081841698
                      EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       ++ k fa++  g     s   +le ++g++++v++  +k  ++ v+++GW+ F+ a +L++gD++ F ++g+s f  +v++f+
  OBART12G17530.1 108 KTILKMFAKNVqG-L--ISGVAKLEVPDGKTYDVEI--SKEHNELVFRSGWEVFAIAYELEQGDILAFGYSGNSHF--KVQIFN 184
                      4788999977744.4..35579**************..**********************************9999..999987 PP

2B354.71.8e-17241332199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+++ +  k   l +pkkfa++  gk   + +++le ++g+ ++v++  +  +++ vl++GW +F +  +Lk gD +vF ++g+s f  +v
  OBART12G17530.1 241 FFKVMMSVSDIKDE-LAIPKKFAANVRGK--IPEQVRLEVSDGKMYNVQV--TEEQDELVLRSGWANFSSTYQLKHGDLLVFIHSGHSHF--KV 327
                      99***999999987.********888666..3446***************..********************************999999..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       +f+ 
  OBART12G17530.1 328 LIFDP 332
                      99885 PP

3B335.61.7e-11456535989
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                       + +sg lv++k++a ++ ++  +++t++l ++ g ++W++ l  +   +  y l++GW +F + n L+egD++vF+ + + ++
  OBART12G17530.1 456 TSVASGSLVFSKDYAVRYLLD--QNRTIKLCQSGGsKTWDISL--DMDTDDlYALSTGWLDFFRGNLLQEGDICVFEASMSkRG 535
                      4556778***********888..4558888887777*******..8888888*************************7644244 PP

4B340.35.8e-13600698199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                      f++v+ +s+ ++++ l+++ k+a+++   k +   ++l+  e+  + +  l ++ + + + l kGW +Fv++n+L+  D+++F+l+++ ++ ++
  OBART12G17530.1 600 FLSVMRSSNCTRQSSLCFSVKYASKYLPHKDQ--NMRLRLpETKYKCKAALHIDTSTNLHKLLKGWGKFVNDNKLEIHDICLFQLMKNkKKLTM 691
                      7889999999999*************544345..5666663455778888877999999***************************999***** PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      +v+++rk
  OBART12G17530.1 692 TVHIIRK 698
                      ****997 PP

5B360.43.1e-19727814197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+kv+     +k+g +++p kfa+++gg+   s t++le+++g+++ev++   k  +  vl++GW++F++a +L+ gD++vF ++g+s f  +v
  OBART12G17530.1 727 FIKVM--ITDFKNG-VTIPAKFARNFGGQM--SGTVKLETRNGKTYEVQV--AKELNNLVLRSGWERFASAYELEKGDILVFIYSGNSHF--KV 811
                      67777..6678887.********9999994..559***************..**********************************9999..66 PP

                      EEE CS
               B3  95 kvf 97 
                       ++
  OBART12G17530.1 812 WIY 814
                      655 PP

6B340.93.8e-139411024693
                       ..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3    6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93  
                       + + + + g+l ++k++a ++ ++k+e  t++l +  ++ +W++ l  +   +  y l++GW +F + n+L+egD++vF+ ++++++  v
  OBART12G17530.1  941 MDKASATDGLLAISKDYAVSYLLDKNE--TIKLCHsGRSMTWDISL--DIDTDDqYALSTGWLDFIRNNHLQEGDICVFEASKNKRG--V 1024
                       5566778899***********888767..56665536678899999..4444434*************************8887666..3 PP

7B335.32e-11110111811396
                       TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
               B3   13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96  
                       s+ ++++ k+a+++     e++ +++   + ++s++ k  ++ + + + l++GW +Fv++n++k gD+++F+l+++ ++  l+++v
  OBART12G17530.1 1101 SRYMCFSAKYAAKYlP--REKN-KIMRLRLPNKSYKYKAVFKINNKVHKLGGGWGKFVDDNKIKLGDICLFQLMKNkKK--LMMMV 1181
                       5667888899999942..3344.455555566777777777999999**************************997444..44444 PP

8B344.52.9e-14121912951494
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94  
                       + +++p k ae ++g+ ++     l+++sg++W+v +   k  ++ +l++GW++F+ka++L+e+D + F+ +g+ ++++ +
  OBART12G17530.1 1219 HGISIPEKVAEIFSGQITK--GFNLKSPSGETWRVGV--AKVADELILKSGWEDFAKAHELQENDLLFFTCNGHGNGSCSF 1295
                       459*******777777555..59999***********..*******************************77665554443 PP

9B345.41.5e-1414281525198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
               B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89  
                       f+ vl +++v ++++l++p +fa++h +   +s ++ l    + ++W+vk+ y +++ +++     W +F ++n+L+eg +++F+l++  ++
  OBART12G17530.1 1428 FVVVLQTAHVRRRNILIVPTRFAADHLER--KSHDILLIRpNRKQKWSVKYYYlSNTTRGFNCH-RWIKFIRENRLREGNVCIFELMKGaRR 1516
                       788999********************544..45567776636779******8865555555544.8*******************9977688 PP

                       E..EEEEE- CS
               B3   90 felvvkvfr 98  
                        +++v+v+ 
  OBART12G17530.1 1517 PTMTVHVIG 1525
                       889998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1594188IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-597186IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-1698188IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-10109184IPR003340B3 DNA binding domain
CDDcd100176.34E-14112184No hitNo description
PROSITE profilePS5086310.278128186IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-21234334IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-21236334IPR015300DNA-binding pseudobarrel domain
CDDcd100175.08E-17239331No hitNo description
PROSITE profilePS5086312.675240333IPR003340B3 DNA binding domain
SMARTSM010192.9E-10241333IPR003340B3 DNA binding domain
PfamPF023621.1E-14241331IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-14441544IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-15442546IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-11447544No hitNo description
PROSITE profilePS5086311.251448546IPR003340B3 DNA binding domain
SMARTSM010192.3E-4450546IPR003340B3 DNA binding domain
PfamPF023629.0E-9456536IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-16592698IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-18593699IPR015300DNA-binding pseudobarrel domain
CDDcd100172.94E-14598697No hitNo description
SMARTSM010193.3E-6600699IPR003340B3 DNA binding domain
PfamPF023624.5E-12600698IPR003340B3 DNA binding domain
PROSITE profilePS508639.248600699IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-22721819IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-22723819IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.465724817IPR003340B3 DNA binding domain
CDDcd100173.73E-20725815No hitNo description
SMARTSM010192.6E-16727817IPR003340B3 DNA binding domain
PfamPF023623.1E-17727813IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-169301028IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-179301029IPR015300DNA-binding pseudobarrel domain
CDDcd100171.66E-109351016No hitNo description
PROSITE profilePS5086312.3799361031IPR003340B3 DNA binding domain
SMARTSM010195.5E-69371034IPR003340B3 DNA binding domain
PfamPF023623.7E-109421023IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-1510801182IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-1810811186IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-1310861168No hitNo description
SMARTSM010195.3E-410881185IPR003340B3 DNA binding domain
PROSITE profilePS508639.7710891185IPR003340B3 DNA binding domain
PfamPF023621.1E-911001181IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-1712021305IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.06912061303IPR003340B3 DNA binding domain
CDDcd100171.45E-1312081301No hitNo description
Gene3DG3DSA:2.40.330.107.0E-1712091305IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-612091303IPR003340B3 DNA binding domain
PfamPF023621.4E-1112181293IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-1714211525IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-2014221523IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-1714261522No hitNo description
SMARTSM010197.9E-1014281527IPR003340B3 DNA binding domain
PfamPF023622.4E-1214281525IPR003340B3 DNA binding domain
PROSITE profilePS5086313.22514281527IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1535 aa     Download sequence    Send to blast
MMNNTPCGHE GSMSYHDNHL QSPSESSLLF NISLPPHSPF QELSGVDSTS LLVSDPTNMQ  60
QFCLRCSWTN PKRLAKPSLA IASLSHQHLA FDKTRCMFIL KIENDTLKTI LKMFAKNVQG  120
LISGVAKLEV PDGKTYDVEI SKEHNELVFR SGWEVFAIAY ELEQGDILAF GYSGNSHFKV  180
QIFNPSNCEK ELSCVVMNRS ISDDNHRQSP RRERMNKPST TCMDCITNHY WLHMDDRERY  240
FFKVMMSVSD IKDELAIPKK FAANVRGKIP EQVRLEVSDG KMYNVQVTEE QDELVLRSGW  300
ANFSSTYQLK HGDLLVFIHS GHSHFKVLIF DPSCTEKEFS CVVTDNTSHV HERSISHDNH  360
LQSPRSEILG KNYSLCSSRK RSRMNPADYP SQRPDVPSSE DIKDPMSSGG LQKSKKSCYV  420
LPMLYNMTSA QEAEVLALEK KIQPQIPLYI TAMDKTSVAS GSLVFSKDYA VRYLLDQNRT  480
IKLCQSGGSK TWDISLDMDT DDLYALSTGW LDFFRGNLLQ EGDICVFEAS MSKRGVALTF  540
HPFKESHCPK SSEYTLSTKS PTRRVPKRDY FATNLTNLTD QQERKVKNKI KSIQSDIPIF  600
LSVMRSSNCT RQSSLCFSVK YASKYLPHKD QNMRLRLPET KYKCKAALHI DTSTNLHKLL  660
KGWGKFVNDN KLEIHDICLF QLMKNKKKLT MTVHIIRKGE MEKSHRVCKN CVANHYWLHM  720
DNHGKSFIKV MITDFKNGVT IPAKFARNFG GQMSGTVKLE TRNGKTYEVQ VAKELNNLVL  780
RSGWERFASA YELEKGDILV FIYSGNSHFK VWIYDPSACE KELPCIITEQ LPRVQQRSIS  840
HNNHTQLKRN AKSAKLYVDS SGHSKETSEI NPANSPSWKP TERVPSSEEL DEPVDLANVQ  900
KATKSFYSLP RMCNMTSAQK AEVDALEKRI KPQIPFYITV MDKASATDGL LAISKDYAVS  960
YLLDKNETIK LCHSGRSMTW DISLDIDTDD QYALSTGWLD FIRNNHLQEG DICVFEASKN  1020
KRGVALIFHP LKQSHHPKPP GCVPSTKFPR HGVSKPNYIV SRFTTLSGQL KIKVEAKVQA  1080
IQSEIPIFVA VMRESFIRGR SRYMCFSAKY AAKYLPREKN KIMRLRLPNK SYKYKAVFKI  1140
NNKVHKLGGG WGKFVDDNKI KLGDICLFQL MKNKKKLMMM VMGEKGCESC RKWQEHYYRE  1200
HMDVSRIRFF RLMTGDFAHG ISIPEKVAEI FSGQITKGFN LKSPSGETWR VGVAKVADEL  1260
ILKSGWEDFA KAHELQENDL LFFTCNGHGN GSCSFDVLIF DASGCEKVSC FFTGKKNSYM  1320
CKNFNSIGGQ VAGQYLSSDS EDTSTPSVLI GSPHKASTSK KLSGKTKTNP RKEPEDPNCS  1380
HWHVIEEKNT DDDEHADYHY TRFANYLTGE ERDEIFSLVS LQPGNPVFVV VLQTAHVRRR  1440
NILIVPTRFA ADHLERKSHD ILLIRPNRKQ KWSVKYYYLS NTTRGFNCHR WIKFIRENRL  1500
REGNVCIFEL MKGARRPTMT VHVIGKADNR FVLLG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419930.0AK241993.1 Oryza sativa Japonica Group cDNA, clone: J075099J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878051.10.0B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT60.0Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A0D3HWA30.0A0A0D3HWA3_9ORYZ; Uncharacterized protein
STRINGOBART12G17530.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-27B3 family protein