PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OBART12G11820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 61aa MW: 6756.79 Da PI: 6.5173 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 47.6 | 5.3e-15 | 9 | 55 | 1 | 47 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL 47 lppGfrF+Ptdeelvv+yL++++ g++l+ + i++v+++ ++P+dL OBART12G11820.1 9 LPPGFRFRPTDEELVVHYLRRRALGSPLPPAVDIPDVRLLAHDPSDL 55 79*************************998556*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-16 | 5 | 56 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 17.058 | 9 | 61 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-8 | 10 | 34 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 61 aa Download sequence Send to blast |
METTAAKKLP PGFRFRPTDE ELVVHYLRRR ALGSPLPPAV DIPDVRLLAH DPSDLLPPGE 60 S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL731763 | 2e-99 | AL731763.1 Oryza sativa chromosome 12, . BAC OSJNBa0090O14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 2e-99 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618303.1 | 7e-35 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A0D3HUE4 | 8e-35 | A0A0D3HUE4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0BSN1 | 2e-33 | A0A0E0BSN1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0JA85 | 2e-33 | A0A0E0JA85_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QXV4 | 2e-33 | A0A0E0QXV4_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q2QQZ6 | 2e-33 | Q2QQZ6_ORYSJ; No apical meristem protein, expressed | ||||
STRING | OGLUM12G13410.2 | 3e-34 | (Oryza glumipatula) | ||||
STRING | ORUFI10G07040.1 | 3e-34 | (Oryza rufipogon) | ||||
STRING | OS12T0477400-01 | 3e-34 | (Oryza sativa) | ||||
STRING | ONIVA12G11920.1 | 3e-34 | (Oryza nivara) | ||||
STRING | OBART12G11820.1 | 1e-35 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33480.1 | 2e-15 | NAC domain containing protein 41 |