PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G08590.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1425aa    MW: 158774 Da    PI: 7.643
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G08590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003713061329122
                       EEET..TTTEEESSHHHHHHHHHH CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                       ++C    C++sFs++ +L  H r 
  OBART12G08590.1 1306 FPCDieGCDMSFSTQQDLLLHKRD 1329
                       789999***************985 PP
2zf-C2H211.80.0007413891415123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       y+C+   Cg++F+  s++ rH r+  H
  OBART12G08590.1 1389 YECQepGCGQTFRFVSDFSRHKRKtgH 1415
                       899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.9E-161960IPR003349JmjN domain
PROSITE profilePS5118314.2012061IPR003349JmjN domain
PfamPF023753.6E-142154IPR003349JmjN domain
SMARTSM005583.3E-43241411IPR003347JmjC domain
PROSITE profilePS5118432.594241411IPR003347JmjC domain
SuperFamilySSF511971.57E-22257408No hitNo description
PfamPF023732.6E-34274394IPR003347JmjC domain
SMARTSM003559.713061328IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.90713291358IPR007087Zinc finger, C2H2
SMARTSM003551513291353IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013311353IPR007087Zinc finger, C2H2
SuperFamilySSF576672.56E-1413401394No hitNo description
Gene3DG3DSA:3.30.160.605.5E-1113561383IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.6E-413591383IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.65513591388IPR007087Zinc finger, C2H2
PROSITE patternPS00028013611383IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.6E-1013841412IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1813891415IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.92613891420IPR007087Zinc finger, C2H2
PROSITE patternPS00028013911415IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1425 aa     Download sequence    Send to blast
MSLQPPAVEP PEWLRTLPVA PEYHPTLAEF ADPIAYILRI EPEASRYGIC KIVPPLPRPP  60
EDDTFRRLQD AFAAAASSNG AGGDPSPTFP TRLQQVGLSA RNRRAASRRV WESGERYTLE  120
AFRAKAAEFE PPRHAAPPRN PTHLQLEALF WAACASRPFS VDRLVWESGE RYTLEAFRAK  180
AAEFEPSRHA TPPKNPTHLQ LEALFWAACT SRPFSVEYGN DMPGSAFASP DELPDAANAT  240
DVGETEWNMR VAPRARGSLL RAMARDVAGV TTPMLYVAML YSWFAWHVED HELHSLNFLH  300
FGKAKTWYGV PRDAMLAFEE TVRVHGYADD LNAIRVAFQT LNEKTTVLSP EVLLSAGVPC  360
CRLVQKAGEF VITFPGAYHS GFSHGFNCGE ASNIATPHWL QVAKEAAIRR ASTNCGPMVS  420
HYQLLYELAL SLRPREPKNF YSVPRSSRLR DKNKNEGDIM VKENFVGSVT ENNNLLSVLL  480
DKNYCIIVPN TDFFVPSFPV ALESEATVKQ RFTAGPCSIS QQGAENMAVD HVAVDKVTDI  540
QDMSGSLYPC ETSLVGCSNR KLYETKYGQR DAAALCLSTS EIQSRGIDKA RSHPAGGILD  600
QGRLPCVQCG ILSFACVAII QPREAAVQFI MSKECISSSA KQGGIGASDD TSNWIDQSHE  660
ISPPPGPASG TDDNVKHTVS LAHVSDRCRE LYASNTDGCT SALGLLASAY DSSDSDDETT  720
EDVLKHSKKN DSVNQSTDTQ ILETSASCSS TVRCQKTNSH SHEEECEARA TSLMKPVSHN  780
SRPISQSNRD TDIDQFIELG KSGTQCSGYL DLVDDLTTSV LKSSSDTCVS AAKASMDPDV  840
LTMLRYNKDS CRMHVFCLEH ALETWTQLQQ IGGANIMLLC HPEYPRAESA AKVIAEELGI  900
KHDWKDITFK EATEEDVKKI RLALQDEDAE PTGSDWAVKM GINIYYSAKQ SKSPLYSKQI  960
PYNSIIYKAF GQENPDSLTD YGCQKSGSTK KKVAGWWCGK VWMSNQVHPL LAREREEQNS  1020
SVVYGKAMFT TISHGKVQDE ASTRCNTSNR TPSKRTSRRK KGVSAEKSKP KNKRSTASDE  1080
VSMHCSGLGM NSGVIHDQTE NSDDYDKHGN GDEIEEGTNP QKYQQRKLQN VTRKSSSKKR  1140
KDEKRTDSFH ELYDEDNGVD YWLNMGSGHD ATLGNSQQQS PDPVKVKSGG KLQGKRKSSK  1200
YKSNDDLLNE ENKLQKMNKK SSSKKQKNDK INRQLQEDQT EDDHMDHLVD VAVADEVTLD  1260
NEDKITEDKI DDVKVKSRGK SQNGKRKGSK HQASDGLRTG NKVAKFPCDI EGCDMSFSTQ  1320
QDLLLHKRDI CPVKGCKKKF FCHKYLLQHR KVHIDERPLK CTWKGCKKAF KWPWARTEHM  1380
RVHTGVRPYE CQEPGCGQTF RFVSDFSRHK RKTGHSSDKR RKNST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-63124327353Transcription factor jumonji (Jmj) family protein
6ip4_A1e-63124327353Arabidopsis JMJ13
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0652510.0AK065251.1 Oryza sativa Japonica Group cDNA clone:J013002J08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620626.10.0lysine-specific demethylase REF6
TrEMBLA0A0D3HTA80.0A0A0D3HTA8_9ORYZ; Uncharacterized protein
STRINGOBART12G08590.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-151relative of early flowering 6