PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART12G04120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 24647.1 Da PI: 8.2061 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.1e-20 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae+Aa+a++ a+++++g OBART12G04120.1 49 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEDAARAYDGAALRFRG 98 8********.**********7.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.94E-31 | 48 | 108 | No hit | No description |
Pfam | PF00847 | 2.1E-13 | 49 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-33 | 49 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 49 | 107 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.462 | 49 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-36 | 49 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-12 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-12 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MMNKTVKLRY VPSRGQHSPA SAAAGDEEEL PSPSSADSGG GGGGTARKRY RGVRQRPWGK 60 WAAEIRDPHK AARVWLGTFD TAEDAARAYD GAALRFRGSR AKLNFPEHAT LPPPPPTTTA 120 AAHRCPPPPR TDALLESQEL SPGAGGGDPY SQYARFLQGS GGDGGEAAAR PGGGASQRTP 180 PATTLLYSFE GDAASAACLW QPESGGGGMG WPATSPAAWL EYGFYPPPER RDTDT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-24 | 48 | 106 | 4 | 63 | ATERF1 |
3gcc_A | 2e-24 | 48 | 106 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 51 | ARKRYRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619856.1 | 1e-140 | ethylene-responsive transcription factor ERF110 | ||||
TrEMBL | A0A0D3HRU8 | 1e-165 | A0A0D3HRU8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART12G04120.1 | 1e-166 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9894 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 8e-25 | ethylene response factor 110 |