PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G02170.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 364aa    MW: 39462.2 Da    PI: 4.3323
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G02170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.22.8e-18171432126
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgk.....rknr.atksgyWka 85 
                      p G+ F P+ e+l+ +yL++ ++g+++e+  ++++e+d+y ++P +L +   ++ ++ k+wyf + ++ k  +g      r nr +   g+W++
  OBART12G02170.1  17 PSGYFFVPKPEQLIRDYLNHWITGRPIEElRDIVREADVYGSDPATLTEahrAYGHDGKSWYFLTVAKWKGGRGGagtagRLNRcVEGGGTWHN 110
                      89************************87725569999**********8434344457789****999999884434445599**666699***9 PP

              NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                      + + + +        g ++ + +   rap  +ktdW+m+e 
  OBART12G02170.1 111 SQRRRVIEG-----YGDRQAFEY---RAPGNKKTDWLMEEI 143
                      988666654.....899999998...599999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-2114165IPR003441NAC domain
PROSITE profilePS5100521.86516165IPR003441NAC domain
PfamPF023652.2E-1017142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAEEDDKKQK GPDVTVPSGY FFVPKPEQLI RDYLNHWITG RPIEELRDIV READVYGSDP  60
ATLTEAHRAY GHDGKSWYFL TVAKWKGGRG GAGTAGRLNR CVEGGGTWHN SQRRRVIEGY  120
GDRQAFEYRA PGNKKTDWLM EEIASNLPAA ITDEGIMVIC KVYLSPRAKQ ATADEEERQE  180
TNVVPGPKRL REAEATGYDA PAPETPQPDV GCSYSGGGET SQATASMDYC CSTTTHTADD  240
TANAAYYHGD ADAIKPDAYD GGDYGIGINA DGELVLCGNG HGGIGTQGQM PLAMQNTNGE  300
MTLFSPMNGY GVGFNEEVRQ EPQVGGEVEM NDFFNDLFVD FDGAGDPNPN PNEGGDSHGH  360
ILCE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3779470.0FQ377947.1 Oryza glaberrima chromosome 12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664975.19e-75PREDICTED: NAC domain-containing protein 76-like, partial
TrEMBLA0A0D3HR680.0A0A0D3HR68_9ORYZ; Uncharacterized protein
STRINGOBART12G02170.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.15e-10NAC domain containing protein 64