PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G01300.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 388aa    MW: 43126.4 Da    PI: 8.006
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G01300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.2e-52191561128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtd e++  yL +k+ + +++    i evd++k+ePwdLp+k+k +ekewyfF+++d ky+tg r+nratk+gyWkatgkd+e+++
  OBART12G01300.1  19 LPPGFRFHPTDAEVILSYLLQKLLNPSFTS-LPIGEVDLNKCEPWDLPSKAKMGEKEWYFFCHKDMKYPTGMRTNRATKEGYWKATGKDREIFK 111
                      79*************************888.56***************99999***************************************** PP

              NAM  95 k...........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +           +++lvg+kktLvfy grapkg+kt+Wvmhe+rl
  OBART12G01300.1 112 QlaicegissknNKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRL 156
                      99***99999888888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-6016183IPR003441NAC domain
PROSITE profilePS5100554.63319183IPR003441NAC domain
PfamPF023654.2E-2620156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MVESTTSLVK LEQDGGLFLP PGFRFHPTDA EVILSYLLQK LLNPSFTSLP IGEVDLNKCE  60
PWDLPSKAKM GEKEWYFFCH KDMKYPTGMR TNRATKEGYW KATGKDREIF KQLAICEGIS  120
SKNNKQLVGM KKTLVFYMGR APKGTKTNWV MHEFRLHGNL HNHHPNLRLN PKDEWVVCKV  180
FHKKQGDEAI NNQQQQPQPA VDQYSAGTPN SSSSVVQAGD DDVGGGDDFF QLDDIIDPSI  240
YFTNSSNIFS APPNNNAVYS VSASTTTTNT TTAGSFQQQP NYYSLINKSS SSSNYSAPLQ  300
QQHVSSWNNT PGGAHGIGNS YNLQQQQAAM VKALENVIAV PNFSTVLPSS NKLMGLSRLA  360
MAGVTQQNPL GVPQYKIENY GDHYISRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-491718418169NAC domain-containing protein 19
3swm_B2e-491718418169NAC domain-containing protein 19
3swm_C2e-491718418169NAC domain-containing protein 19
3swm_D2e-491718418169NAC domain-containing protein 19
3swp_A2e-491718418169NAC domain-containing protein 19
3swp_B2e-491718418169NAC domain-containing protein 19
3swp_C2e-491718418169NAC domain-containing protein 19
3swp_D2e-491718418169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1822780.0AB182278.1 Oryza sativa Japonica Group mRNA for ONAC300, complete cds.
GenBankAK2876660.0AK287666.1 Oryza sativa Japonica Group cDNA, clone: J065117E22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620530.10.0NAC domain-containing protein 77
SwissprotQ5CD170.0NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A0D3HQU90.0A0A0D3HQU9_9ORYZ; Uncharacterized protein
STRINGOBART12G01300.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.25e-73Arabidopsis NAC domain containing protein 87