PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G00860.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 341aa    MW: 36503.5 Da    PI: 6.2307
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G00860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.42.5e-22129189359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 
                      Dgy+WrKYGqK+++g+ +prsYYrCt +   gC +kk v+r+   + +  ++ Y +eH+++
  OBART12G00860.1 129 DGYQWRKYGQKQIEGAMYPRSYYRCTNStnqGCLAKKTVQRNGGGGAAgYTVAYISEHTCK 189
                      9************************9888889**********98776537899*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-24112190IPR003657WRKY domain
SuperFamilySSF1182902.62E-21120189IPR003657WRKY domain
SMARTSM007742.8E-31127190IPR003657WRKY domain
PfamPF031063.4E-22129189IPR003657WRKY domain
PROSITE profilePS5081119.52129170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEEAYCMMMV GRERELVAEL RHLLFPSPSP TTPASHSTTA LAGDDECLPP GLTTTTTVSG  60
GGGRRRGRKR VRRDNDNLKL LQADDDQEVL AAAVHGDANA KPLPNFTKTS RRKQQTTTST  120
MVTTVPDFDG YQWRKYGQKQ IEGAMYPRSY YRCTNSTNQG CLAKKTVQRN GGGGAAGYTV  180
AYISEHTCKS IEPSLPPVIL DTTVRATNNH HPPAASSSCA AQSPAAAATS SSSDMMMTST  240
SSTSSETGNW SGQHGAYACR RQMIAADEEY CCWDTPATTT TSGSDGGNSS TCADQEIDLM  300
SGPIRSPLHI AADGNWVDDL LLVGDGLIDI SSANITHLFS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-141291891069OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16472RRGRKRVRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005000.0BX000500.4 Oryza sativa chromosome 12, . BAC OSJNBb0027B07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619481.10.0WRKY transcription factor SUSIBA2
TrEMBLA0A0D3HQP20.0A0A0D3HQP2_9ORYZ; Uncharacterized protein
TrEMBLI1R3H10.0I1R3H1_ORYGL; Uncharacterized protein
STRINGORGLA12G0007700.10.0(Oryza glaberrima)
STRINGOBART12G00860.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-14WRKY DNA-binding protein 46