PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART12G00850.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 321aa    MW: 35765.6 Da    PI: 6.3699
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART12G00850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.27.1e-18147201356
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeH 56 
                      Dg++WrKYGqK++++s++prsYYrCt++   +C+++k v++ + d +     Y+g+H
  OBART12G00850.1 147 DGHQWRKYGQKHINNSKHPRSYYRCTYRqeeKCKATKTVQQRE-DLHHA-NSYNGDH 201
                      9**************************99999********987.33322.2344433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-21140215IPR003657WRKY domain
SuperFamilySSF1182906.28E-18141215IPR003657WRKY domain
SMARTSM007741.1E-28145217IPR003657WRKY domain
PROSITE profilePS5081114.584147187IPR003657WRKY domain
PfamPF031062.3E-22147215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MKNSSNKRPL VADQWHPSSV CCDHRAALRE IARGQSLVTQ LRAIVLPALH SDERGDLAAQ  60
MLEGILDCSR KAISELQLQL SSDSPHDDDG HLDDKRRVRK IVSSSSDDDD HCSSKAAEDH  120
NAKPLRQHKR RRFGDSVSLE TPVPHYDGHQ WRKYGQKHIN NSKHPRSYYR CTYRQEEKCK  180
ATKTVQQRED LHHANSYNGD HPVMYTVVYY GQHTCCKGPA ASADDHVVVE ASQISTDSHC  240
QSPGSSSSEL QAAAHAGDSS QCSNISVTCS SSVVVEDCNK LLDMLPAADE LTTDVLLFDM  300
TAYAPLDLDI NWEMDTNALW A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-141472151068OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981830.0DQ298183.1 Oryza sativa WRKY transcription factor 64 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620021.10.0probable WRKY transcription factor 70
TrEMBLA0A0D3HQP10.0A0A0D3HQP1_9ORYZ; Uncharacterized protein
TrEMBLI1R3H00.0I1R3H0_ORYGL; Uncharacterized protein
STRINGORGLA12G0007600.10.0(Oryza glaberrima)
STRINGOBART12G00850.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-17WRKY DNA-binding protein 70