PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G23060.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 1351aa    MW: 152049 Da    PI: 7.3276
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G23060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.22e-20991110217127
              NAM   17 eyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgk..dkevlskkgelvglk 103 
                         L++k+++++ + +++i+ v++y+v+Pw+L++k++    + + w +F+++  k+     ++r+t sgyWka+    ++ ++s++g  +g+k
  OBART11G23060.1  991 LLLTNKLDKQPDDPTHTIPVVGVYSVDPWQLRAKAEVdtrKGEPWLYFCPEPGKEG----SSRSTPSGYWKAQAGpsHRIIYSTGGLPIGVK 1078
                       57999******888789**************85433322345599*****988864....7999*******77542356667779999**** PP

              NAM  104 ktLvfykgrapkgektdWvmheyr 127 
                       +t+vf+  +a++++kt W+m+e++
  OBART11G23060.1 1079 NTMVFHYSSAESATKTGWIMDEFT 1102
                       **********************97 PP
2WRKY41.33e-1312291289659
                       -EEEEEEE--T.T-SS-EEEEEE-ST...T---EEEEEE-S..SS.TTEEEEEEES--SS- CS
             WRKY    6 nWrKYGqKevk.gsefprsYYrCtsa...gCpvkkkversa..ed.pkvveitYegeHnhe 59  
                       +Wr YGqK +  +s+ prsYYrCt++   +C++++ v++ +   d + + e+   geH+++
  OBART11G23060.1 1229 SWRMYGQKYIDvDSRWPRSYYRCTHRsthDCRATRTVQQRRctGDgTPMYEVLDYGEHTCP 1289
                       6*********75899**********99999*******965422441468999999***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147981.61E-1017111No hitNo description
SuperFamilySSF525407.71E-42198424IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3005.0E-7199291IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003644.4E-7218233No hitNo description
PfamPF009319.1E-29285448IPR002182NB-ARC
PRINTSPR003644.4E-7359373No hitNo description
SuperFamilySSF520581.02E-23489873IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.4E-13522863IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5100524.0269751128IPR003441NAC domain
SuperFamilySSF1019417.32E-249901128IPR003441NAC domain
PfamPF023656.4E-1010211102IPR003441NAC domain
Gene3DG3DSA:2.20.25.807.0E-1312121290IPR003657WRKY domain
SMARTSM007742.2E-1312221290IPR003657WRKY domain
PfamPF031068.1E-1412291289IPR003657WRKY domain
SuperFamilySSF1182902.48E-1212291290IPR003657WRKY domain
PROSITE profilePS5081110.10812301269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1351 aa     Download sequence    Send to blast
MEVSTCALWG AMFNLPGRLD ELLRRHGSML PKGAEEEIPL IKRDLEKIIS ILHDHNHNHN  60
DEEMEGHASG AIMVRRCWIK EVRELGYDIE DCIDHYEHGA AGCSSSRSIP HPRRKITRRR  120
RRTTKMPPRL PDKLKQRLWM ANMIREFSLR VQEALQRHAT YNLGGSSSST NDDASSDHRL  180
SVGEYAHDCR HFGIHSSTAM DKLREWLDVD SGEEKLKVVF LVGAGGVGKT TVASELYGEL  240
RRRFECGAFV RTSQKPNITR LLISMLSQVR PHQSPENWKF HTLISSIRTH LQDKSIILTT  300
TEIEDLAFQS YDYDYKYVFK MKPLGEDDSR DLFFSTVFGP NSTCPTNLRE VSCDIIRKCG  360
GLPLAIVTIA SLLAKLRKWE QWGYVNKDLG YSLMTNPTME GIKQVMNLSY NNLPQHLKPC  420
MLYLSIYQED YIIWKDDLVN QWMAEGLICG TQGHDNEEIS GTYFEELVGR KMVQPVHINE  480
NGKVLSCVIH PMVLNFIKYK SIEENFITAI DHSQINTVIA DKVRRLSIHF GNTKDASIPT  540
NMRLSQVRTL AIFGFFKCIP FIMDFRLLKV LILHFWDDED STSFDLTKIS ELFRLRYLKI  600
ISNVTLKLQK QIQGLQHLET LQIDARVSAV PSDITHLTGL LHLNLPADTV LPDGIGQMTS  660
LRTLSFYLNG NSIENVISLG ELTNIRDLQF TCSSIQPDNL KKKMQCLGSI IERLRNLKSI  720
TLLPTRSSYA NSLEDAGATS MRIHVDSLSS VSSPPAHLER LELLPRICIL SYFPMWIGNL  780
SKLCILKIGV RELVKNDIDV LGGLPALIVL SLYVHTKPEE IIVFDKTGFP VLKYLKFNCC  840
VPWLRFKEDS MHNLRKLKLG YNAHRADEES TIPDGMEYLS LHLNEVSVKI GVADPEKYDK  900
LSAELEYKLA FGFDMIIRPT VNIRCVKHIF DCKVSKSRLA QEDYGKVEQH EILEEDTDVP  960
DEVDEIKQDS GQEASKRADS NSTLSDRHIL LLLTNKLDKQ PDDPTHTIPV VGVYSVDPWQ  1020
LRAKAEVDTR KGEPWLYFCP EPGKEGSSRS TPSGYWKAQA GPSHRIIYST GGLPIGVKNT  1080
MVFHYSSAES ATKTGWIMDE FTAFHNEGGG TTIPKPRSDI SLCRLYTTQG PSALCSTEGS  1140
SSEWPIRRGM VPRMEGALEA PKQCEKGTTT EGKGIIESVL LAGENANKNA DSDKSRKRRT  1200
TESRLGGSRQ LVRKVTTSCD PNADGLSGSW RMYGQKYIDV DSRWPRSYYR CTHRSTHDCR  1260
ATRTVQQRRC TGDGTPMYEV LDYGEHTCPV QHQQQLPSHS DDDRGSGISA AVQQPSTTPG  1320
AADTGSVDHV SSVSGSATSA SPASSPPAGN S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C7e-28127783102779Disease resistance RPP13-like protein 4
6j5t_F7e-28127783102779Disease resistance RPP13-like protein 4
6j5t_G7e-28127783102779Disease resistance RPP13-like protein 4
6j5t_L7e-28127783102779Disease resistance RPP13-like protein 4
6j5t_O7e-28127783102779Disease resistance RPP13-like protein 4
6j5u_A7e-28127783102779Disease resistance RPP13-like protein 4
6j5v_A7e-28127783102779Disease resistance RPP13-like protein 4
6j5w_A7e-28127783102779Disease resistance RPP13-like protein 4
6j6i_C7e-28127783102779Disease resistance RPP13-like protein 4
6j6i_F7e-28127783102779Disease resistance RPP13-like protein 4
6j6i_G7e-28127783102779Disease resistance RPP13-like protein 4
6j6i_L7e-28127783102779Disease resistance RPP13-like protein 4
6j6i_O7e-28127783102779Disease resistance RPP13-like protein 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122RRRRRT
211941199SRKRRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615335.10.0disease resistance protein RGA5-like isoform X1
RefseqXP_015615336.10.0disease resistance protein RGA5-like isoform X1
TrEMBLA0A0D3HQ120.0A0A0D3HQ12_9ORYZ; Uncharacterized protein
STRINGOBART11G23060.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-23NAC domain containing protein 90