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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OBART11G23010.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | NAC | ||||||||
| Protein Properties | Length: 1157aa MW: 131251 Da PI: 7.6354 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 21.7 | 5.6e-07 | 1065 | 1096 | 96 | 127 |
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127
+++ vglkk++ +y+gr+p+g+kt+W ++e+
OBART11G23010.1 1065 DRHPVGLKKSMLLYRGREPSGRKTKWKIDEFW 1096
6788**************************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd14798 | 9.13E-8 | 9 | 106 | No hit | No description |
| SuperFamily | SSF52540 | 2.81E-48 | 207 | 470 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 3.7E-18 | 215 | 364 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 7.9E-50 | 216 | 496 | IPR002182 | NB-ARC |
| PRINTS | PR00364 | 3.4E-13 | 236 | 251 | No hit | No description |
| PRINTS | PR00364 | 3.4E-13 | 308 | 322 | No hit | No description |
| PRINTS | PR00364 | 3.4E-13 | 405 | 419 | No hit | No description |
| SuperFamily | SSF52058 | 5.27E-20 | 539 | 913 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 8.3E-12 | 626 | 912 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| PRINTS | PR00364 | 3.4E-13 | 761 | 777 | No hit | No description |
| SuperFamily | SSF101941 | 9.55E-7 | 1063 | 1107 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1157 aa Download sequence Send to blast |
MEAPTCGLWG AVLNLPGRLD GVLLRHGSIL PKGVEEEIPL IKKDLHLMIS ILNGYYSESP 60 ELEDATATTM ARRRCWTKEV RELSYDIEDC IDHYEHAATA DSPGGRTASG GIPPRRKITR 120 RRWQRTTPLW NPERLKQRLW MANKIREFSL RAQDALKRHA MFCSSVGGNG IATSTASSST 180 AATGDASSSS STICWHTTRF RERDFCVPPV GINVAMNKLE DWLTACDDED QKRLRVVSIV 240 GVGGIGKTTL ANELYRKLRR QFECWAFVRS SQKPDVRRIL ISILSQLRLQ QPPESWKVHS 300 LISSIRAHLQ DKRYLIIVDD ICFISTWDII KCALPDGTSS SRVLTTTQYD DLAVQSCGYD 360 TKYVFKMKSL SQHDSRYLFF NTVSGSRFIY SPGSTEVSDD IIRKCGSLPL AIVSITSILE 420 KSRKMEQWGY VNKSLGYNLM KNPTLEGIKQ VLDLSYNNLS EHLKPCVLYL SIYQEDYLIC 480 KDDLVNQWLA EGLICATKDH TKEEISEACF GELVSSKMIQ PVHIDGNGDV MSFVIQHMVL 540 NFIRYKSIEE NFVTVIHHSQ TATKLSDKVR RLSLHFGNVK DAKLPINMRL SQVRTLAFFG 600 AYKYWWRSIK DQFPLLQVLI LYFWHDEDII SFDLTIISQL FRLKYLKITS DVTLELQTKT 660 RGLQCLETLK IDARISTAPL DTTHLSGLLH LSLPADTNLA NGIGHMTSLH TFGYFDLSYN 720 SVENVLSLGK LTNLRNLQLT CFTIQPNNLE IKLQCLGFIL QKLSNLKSVT MSTAGSSCVN 780 STDASSTNIS VRISGDGLSS MSSPPALVER LELLPRICIF SYLPKWISLL SKLRILKIGV 840 RELVRNDIDV LMGLRALTDL SLHVHTKPTE IIFFGRLGFK ALKYLKINCC VACLKFDMDA 900 MPSLYKLKLG YNVDGVDQER TIPDGIQDLY GLKEISVKIG GADPEKYDRR AEELAFMIDS 960 GLRYRCMSVT LQCVRQMFDF NEDKSSLTQE EQRKLKQQEI LEDDSDEEYD EIIQDSGEQE 1020 VKQSALSEWD IVHLLRNKLD NQQDGTTCHF PVVASYYVDT CQLTDRHPVG LKKSMLLYRG 1080 REPSGRKTKW KIDEFWALDN AANGSEELLA QLCRSRQNVG LMPRFPLSLC RLYSTKSSSE 1140 RHVLATSSNE ISEDESD |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j5t_C | 8e-32 | 210 | 543 | 161 | 495 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 8e-32 | 210 | 543 | 161 | 495 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 8e-32 | 210 | 543 | 161 | 495 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 8e-32 | 210 | 543 | 161 | 495 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 8e-32 | 210 | 543 | 161 | 495 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 8e-32 | 210 | 543 | 161 | 495 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 8e-32 | 210 | 543 | 161 | 495 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 8e-32 | 210 | 543 | 161 | 495 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 8e-32 | 210 | 543 | 161 | 495 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 8e-32 | 210 | 543 | 161 | 495 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 8e-32 | 210 | 543 | 161 | 495 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 8e-32 | 210 | 543 | 161 | 495 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 8e-32 | 210 | 543 | 161 | 495 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AC135644 | 0.0 | AC135644.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0085H07, complete sequence. | |||
| GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015615335.1 | 0.0 | disease resistance protein RGA5-like isoform X1 | ||||
| Refseq | XP_015615336.1 | 0.0 | disease resistance protein RGA5-like isoform X1 | ||||
| TrEMBL | A0A0D3HQ07 | 0.0 | A0A0D3HQ07_9ORYZ; Uncharacterized protein | ||||
| STRING | OBART11G23010.1 | 0.0 | (Oryza barthii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP2751 | 19 | 33 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G22380.1 | 6e-10 | NAC domain containing protein 90 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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