PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G22970.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 1297aa    MW: 147502 Da    PI: 6.7613
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G22970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.61.6e-2510011061158
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58  
                       +dDg++WrKYGqK+++g  +prsYYrC+++   +Cp+kk+v+ +++dp+vv+++Y geH++
  OBART11G22970.1 1001 VDDGFSWRKYGQKQIQGDMHPRSYYRCAYSrdnHCPAKKQVQPTKDDPTVVDVVYYGEHTC 1061
                       59***************************98999*************************98 PP
2WRKY73.52.8e-2311331192359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                       Dgy+WrKYGqK++ g+++pr+YY C+++   gC+++k+v r++ dp +++++Y g H+++
  OBART11G22970.1 1133 DGYSWRKYGQKDILGAKYPRGYYMCSHRntqGCKATKQVHRTDGDPLLFDVVYLGVHTCS 1192
                       9**************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147983.62E-122132No hitNo description
SuperFamilySSF525404.13E-56155426IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3005.8E-17176339IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009313.3E-51179451IPR002182NB-ARC
PRINTSPR003644.8E-15191206No hitNo description
PRINTSPR003644.8E-15263277No hitNo description
PRINTSPR003644.8E-15360374No hitNo description
SuperFamilySSF520581.41E-25490890IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.1E-19560865IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003644.8E-15715731No hitNo description
Gene3DG3DSA:2.20.25.805.0E-269931062IPR003657WRKY domain
PROSITE profilePS5081121.2079961059IPR003657WRKY domain
SuperFamilySSF1182904.71E-249991063IPR003657WRKY domain
SMARTSM007745.4E-3310011063IPR003657WRKY domain
PfamPF031064.5E-2510021061IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-2311181192IPR003657WRKY domain
PROSITE profilePS5081120.80511261189IPR003657WRKY domain
SuperFamilySSF1182901.57E-2111271192IPR003657WRKY domain
SMARTSM007744.0E-3411311193IPR003657WRKY domain
PfamPF031061.3E-2211331191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1297 aa     Download sequence    Send to blast
MEGAMFNLPG RLEELLCHHG SMLPKGADEE IPLIKQDLEE IISILHGHSE PKLEDHGMMV  60
RCWMKEVREL SYDIEDSIDQ YEHATRSRNR PNIRHRKFNR WRGNKIPCFP QKLKQRLWMA  120
NKIREFSLRA QEALQRHAMY NNLGGVASDV SSTSSRQPTR FMESTCHVGI DAAMDQLENL  180
IDVCGEEKLK VVSIVGVGGV GKTTLANKLY HKLRWQFECW AFVRSSQKTD MRRLLINILS  240
QVWPHQSPDN WKVHTLISSI RTHLQDKRYL IIIDDLWATS TWDIIKCALP DGNNSCRILT  300
TTEIEDLALQ SCSYDLKFIF KMKPFGEDDS RKLFFSSIFG SHSKCPPEVS ETSYDIVRKC  360
GGLPLAIVIV ASLVASHLEK QEQWDYINKS LGYSLMANPT LEGMKQLLNL CYNNLPQHLK  420
ACMLYLSMYQ DHIIWKDDLV SQWIAEGFIC AIEGHDEEEI SRAYFDELLG RKIIQPVHID  480
DNGEVLSCVI HHVVLNFVTY KTIEENFTIV IDHSQTTIRF ADKIRRLSVH FGKVEDSTPP  540
TNMRLSQVRS VAYFGVLKYM PFIMEFRLIK VLVLHFLGDE DSTGIFDLTK ISELVRLRYL  600
KVTSNVTLKL PTRMQGLQYL ETLKIDGKIS AVPSDIIHLP GLLHLTLPAK TNLPNGIVHM  660
TSLRTIGYFD LSCNSAENLW SLGELTNLRD LQLTCSEIHS DNLKNNMKYL GSILGKLHNL  720
KSMTLSPVGS SYADTLHIDR ATSTGISVIG CSSVSSPPAL LQRFDLLPCV CIFSNLPNWI  780
GQLGNLCILK IGIRKITSDS IDVLGVLPEL TVLSLYVHTK LEERIIFKKA GFSILKYFKF  840
KFRCSLVWMK FEAGALPNLR KLKLGFDVHR EDRYDTVPFG IEHLSRLEEI SAKIRIDCTA  900
DNLSRRFAES SFANAIRMHT GCPSINVRCV DWTSDCKDDD NVGTGEEEHR TLEKHHHIVK  960
EGSNETTAVL QEDTWERAHK SVNNRKTQPT ERTKVRMSSM VDDGFSWRKY GQKQIQGDMH  1020
PRSYYRCAYS RDNHCPAKKQ VQPTKDDPTV VDVVYYGEHT CGYTAHSRPT GSSNLQEEPQ  1080
QPGLEQIPAT SPYYDWIDLR FIIPPSNKKV EKTKRKRVQV RVSSVEDVSQ EYDGYSWRKY  1140
GQKDILGAKY PRGYYMCSHR NTQGCKATKQ VHRTDGDPLL FDVVYLGVHT CSDHIASLNE  1200
QVLLSDLSSA SPQQSQINLQ LSELDHSSAT VTCTASSSVV VDDQDHQVVT SAAASFLSVD  1260
DMLDLDEDGE VWTTTTDEAT AWDDGESIGE VSDMDFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6s2p_N2e-3916849711339NRC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0660530.0AK066053.1 Oryza sativa Japonica Group cDNA clone:J013052I15, full insert sequence.
GenBankAK1211020.0AK121102.1 Oryza sativa Japonica Group cDNA clone:J023069N11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877420.10.0disease resistance protein RGA5-like isoform X5
TrEMBLA0A0D3HQ030.0A0A0D3HQ03_9ORYZ; Uncharacterized protein
STRINGOBART11G22970.20.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-25WRKY family protein