PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART11G16060.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 255aa MW: 29175.6 Da PI: 9.824 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.9 | 1.8e-13 | 17 | 101 | 8 | 98 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++ +++p +++++++ e+ ++l + + + ++++ +k+s++ ++t+GW+eF +a gL+ g+ vvFk s+ + +v v++ OBART11G16060.7 17 LTTGNQHYVRVPSAITRTYQLEDEQ--NVKLVTAHELEVNIRI--QKSSNKLYMTEGWEEFIEATGLQLGEYVVFKAL--SSSKIHVIVLN 101 56678888999********999766..6999999999999999..*******************************54..45556777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-15 | 9 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.38E-8 | 10 | 101 | No hit | No description |
PROSITE profile | PS50863 | 10.926 | 10 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-15 | 11 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.8E-4 | 12 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-11 | 17 | 98 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.63E-13 | 153 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-9 | 155 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.318 | 158 | 255 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1 | 158 | 251 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-7 | 159 | 251 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.10E-7 | 168 | 242 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004471 | Molecular Function | malate dehydrogenase (decarboxylating) (NAD+) activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MPDAIGMDPP IFSTVRLTTG NQHYVRVPSA ITRTYQLEDE QNVKLVTAHE LEVNIRIQKS 60 SNKLYMTEGW EEFIEATGLQ LGEYVVFKAL SSSKIHVIVL NKNGHLRCPV PEDISESEAA 120 PNRPAPSKRT VKEMHQAITE VKNYIKDIAQ FLHRSNKFDI TTINATFMKQ DRVYFSKEFS 180 RKYIAPLARR KTLKIKVQLA GHPSSTMILH KSTDDRYNLK AGWAHFAIKN NIELGSLCIF 240 HFYKTNQLQA TIDVL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D3HMP8 | 0.0 | A0A0D3HMP8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART11G16060.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 5e-10 | B3 family protein |