PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G16060.3
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 405aa    MW: 46019 Da    PI: 9.7019
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G16060.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.2e-13167251898
                      -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +++++ +++p   +++++++ e+   ++l + +  + ++++  +k+s++ ++t+GW+eF +a gL+ g+ vvFk    s+ + +v v++
  OBART11G16060.3 167 LTTGNQHYVRVPSAITRTYQLEDEQ--NVKLVTAHELEVNIRI--QKSSNKLYMTEGWEEFIEATGLQLGEYVVFKAL--SSSKIHVIVLN 251
                      56678888999********999766..6999999999999999..*******************************54..45555777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.103801.2E-32194IPR012301Malic enzyme, N-terminal domain
SuperFamilySSF532238.63E-29294No hitNo description
SMARTSM012742.7E-114115IPR012301Malic enzyme, N-terminal domain
PfamPF003901.6E-25494IPR012301Malic enzyme, N-terminal domain
SuperFamilySSF1019363.34E-15159254IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.926160253IPR003340B3 DNA binding domain
CDDcd100178.68E-8160251No hitNo description
Gene3DG3DSA:2.40.330.107.1E-15161254IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-4162253IPR003340B3 DNA binding domain
PfamPF023627.3E-11167248IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-12303399IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-9305402IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1308401IPR003340B3 DNA binding domain
PROSITE profilePS508638.318308405IPR003340B3 DNA binding domain
PfamPF023622.9E-7310401IPR003340B3 DNA binding domain
CDDcd100172.69E-7318392No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004471Molecular Functionmalate dehydrogenase (decarboxylating) (NAD+) activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDLQERNERL FYKLLINNVE ELLPVVYTPR STGQSLFFRR PQGQEKMFEL LRNWPEESIQ  60
VIVVTDGERI LGLGDLGCQG MGIPVGKLAL YTALRVCVVK SAYSSKVRES LAAGRRGHWH  120
SHSAPLLWLL PGYNYGSTDI LHGQADHGKS TLPAIGMDPP IFSTVRLTTG NQHYVRVPSA  180
ITRTYQLEDE QNVKLVTAHE LEVNIRIQKS SNKLYMTEGW EEFIEATGLQ LGEYVVFKAL  240
SSSKIHVIVL NKNGHLRCPV PEDISESEAA PNRPAPSKRT VKEMHQAITE VKNYIKDIAQ  300
FLHRSNKFDI TTINATFMKQ DRVYFSKEFS RKYIAPLARR KTLKIKVQLA GHPSSTMILH  360
KSTDDRYNLK AGWAHFAIKN NIELGSLCIF HFYKTNQLQA TIDVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ou5_A1e-3419498202Malic enzyme
5ou5_B1e-3419498202Malic enzyme
5ou5_C1e-3419498202Malic enzyme
5ou5_D1e-3419498202Malic enzyme
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0738581e-67AK073858.1 Oryza sativa Japonica Group cDNA clone:J033072B12, full insert sequence.
GenBankAY4443381e-67AY444338.1 Oryza sativa (indica cultivar-group) cytosolic NADP malic enzyme mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3HMP40.0A0A0D3HMP4_9ORYZ; Uncharacterized protein
STRINGOBART11G16060.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-09B3 family protein