PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G16060.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 433aa    MW: 49103.6 Da    PI: 9.8177
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G16060.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.11.3e-121992791298
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++  ++p   +++++++ e+   ++l + +  + ++++  +k+s++ ++t+GW+eF +a gL+ g+ vvFk    s+ + +v v++
  OBART11G16060.2 199 EQAKKRVPSAITRTYQLEDEQ--NVKLVTAHELEVNIRI--QKSSNKLYMTEGWEEFIEATGLQLGEYVVFKAL--SSSKIHVIVLN 279
                      445567899999999888666..6999999999999999..*******************************54..45555777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.103801.9E-361106IPR012301Malic enzyme, N-terminal domain
SuperFamilySSF532235.4E-322106No hitNo description
PfamPF003904.8E-294106IPR012301Malic enzyme, N-terminal domain
SMARTSM012744.6E-144122IPR012301Malic enzyme, N-terminal domain
Gene3DG3DSA:2.40.330.103.1E-14183282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-14183282IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.236188281IPR003340B3 DNA binding domain
PfamPF023622.4E-10197276IPR003340B3 DNA binding domain
CDDcd100171.00E-6204279No hitNo description
SuperFamilySSF1019362.35E-12331427IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-9333430IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.318336433IPR003340B3 DNA binding domain
CDDcd100172.60E-7346420No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004471Molecular Functionmalate dehydrogenase (decarboxylating) (NAD+) activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDLQERNERL FYKLLINNVE ELLPVVYTPR STGQSLFFRR PQGQEKMFEL LRNWPEESIQ  60
VIVVTDGERI LGLGDLGCQG MGIPVGKLAL YTALRGVRPS AVICVVKSAY SSKVRESLAA  120
GRRGHWHSHS APLLWLLPGI GPEGVAIIMD PPTFSMVKLT TANQHYLLPF RPDEPALATS  180
TIPSTHRHHQ QPVFSSDPEQ AKKRVPSAIT RTYQLEDEQN VKLVTAHELE VNIRIQKSSN  240
KLYMTEGWEE FIEATGLQLG EYVVFKALSS SKIHVIVLNK NGHLRCPVPE DISESEAAPN  300
RPAPSKRTVK EMHQAITEVK NYIKDIAQFL HRSNKFDITT INATFMKQDR VYFSKEFSRK  360
YIAPLARRKT LKIKVQLAGH PSSTMILHKS TDDRYNLKAG WAHFAIKNNI ELGSLCIFHF  420
YKTNQLQATI DVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ou5_A2e-37110398211Malic enzyme
5ou5_B2e-37110398211Malic enzyme
5ou5_C2e-37110398211Malic enzyme
5ou5_D2e-37110398211Malic enzyme
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0738581e-77AK073858.1 Oryza sativa Japonica Group cDNA clone:J033072B12, full insert sequence.
GenBankAY4443381e-77AY444338.1 Oryza sativa (indica cultivar-group) cytosolic NADP malic enzyme mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3HMP30.0A0A0D3HMP3_9ORYZ; Uncharacterized protein
STRINGOBART11G16060.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-09B3 family protein