PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G16060.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 471aa    MW: 53320.5 Da    PI: 9.7651
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G16060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.4e-13233317898
                      -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +++++ +++p   +++++++ e+   ++l + +  + ++++  +k+s++ ++t+GW+eF +a gL+ g+ vvFk    s+ + +v v++
  OBART11G16060.1 233 LTTGNQHYVRVPSAITRTYQLEDEQ--NVKLVTAHELEVNIRI--QKSSNKLYMTEGWEEFIEATGLQLGEYVVFKAL--SSSKIHVIVLN 317
                      56678888999*9******999766..6999999999999999..*******************************54..45555777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.103802.2E-361106IPR012301Malic enzyme, N-terminal domain
SuperFamilySSF532236.26E-322106No hitNo description
SMARTSM012744.6E-144122IPR012301Malic enzyme, N-terminal domain
PfamPF003905.8E-294106IPR012301Malic enzyme, N-terminal domain
PROSITE profilePS5086310.926226319IPR003340B3 DNA binding domain
CDDcd100178.85E-8226317No hitNo description
SuperFamilySSF1019364.9E-15226320IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-15227320IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-4228319IPR003340B3 DNA binding domain
PfamPF023629.3E-11233314IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-12369465IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-9371468IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.318374471IPR003340B3 DNA binding domain
SMARTSM010191.1374467IPR003340B3 DNA binding domain
CDDcd100172.99E-7384458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004471Molecular Functionmalate dehydrogenase (decarboxylating) (NAD+) activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDLQERNERL FYKLLINNVE ELLPVVYTPR STGQSLFFRR PQGQEKMFEL LRNWPEESIQ  60
VIVVTDGERI LGLGDLGCQG MGIPVGKLAL YTALRGVRPS AVICVVKSAY SSKVRESLAA  120
GRRGHWHSHS APLLWLLPGI GPEGVAIIMD PPTFSMVKLT TANQHYLLPF RPDEPALATS  180
TIPSTHRHHQ QPVFSSDPEQ AKKIYTCSNL DIPSSVRIKP IGMDPPIFST VRLTTGNQHY  240
VRVPSAITRT YQLEDEQNVK LVTAHELEVN IRIQKSSNKL YMTEGWEEFI EATGLQLGEY  300
VVFKALSSSK IHVIVLNKNG HLRCPVPEDI SESEAAPNRP APSKRTVKEM HQAITEVKNY  360
IKDIAQFLHR SNKFDITTIN ATFMKQDRVY FSKEFSRKYI APLARRKTLK IKVQLAGHPS  420
STMILHKSTD DRYNLKAGWA HFAIKNNIEL GSLCIFHFYK TNQLQATIDV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ou5_A7e-37110398211Malic enzyme
5ou5_B7e-37110398211Malic enzyme
5ou5_C7e-37110398211Malic enzyme
5ou5_D7e-37110398211Malic enzyme
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0738581e-77AK073858.1 Oryza sativa Japonica Group cDNA clone:J033072B12, full insert sequence.
GenBankAY4443381e-77AY444338.1 Oryza sativa (indica cultivar-group) cytosolic NADP malic enzyme mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3HMP20.0A0A0D3HMP2_9ORYZ; Uncharacterized protein
STRINGOBART11G16060.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2655622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-09B3 family protein