PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART11G14740.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 27844.7 Da PI: 8.8696 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.1 | 4.9e-21 | 31 | 113 | 51 | 128 |
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128 ++++ek yfF++++ k ++++r+nr+t++g+W++ g++k+v+ + + vg+++tL+fy g+++++e+t+W m+e+rl OBART11G14740.2 31 LTEREKGKYFFMQKEIKCPSSRRSNRITSKGFWRSAGSEKPVYYNqgG--GsdcmlVGMRRTLTFYFGNSRTAERTKWGMQEFRL 113 45678899***********************************98551..234566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.711 | 1 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-10 | 26 | 113 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.29E-21 | 31 | 123 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MARVVLSTPI VNGATMHLPA VGMSHPTEGA LTEREKGKYF FMQKEIKCPS SRRSNRITSK 60 GFWRSAGSEK PVYYNQGGGS DCMLVGMRRT LTFYFGNSRT AERTKWGMQE FRLAGNGLSP 120 YPAMKHATGD GSKPPCNCAE TTIAKRNDGL SAVLRNVLAV TPLVETVVEP DGSWLICRIY 180 RTRQRALPVI TPPAIENARE IIIPPANGNA REAQVHFIDF LPQGSHIESS SPCSCIVGPS 240 LAEGSDESAG SVDQKD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ940196 | 0.0 | FJ940196.1 Oryza sativa Japonica Group clone KCS246C06 NAM protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615934.1 | 1e-93 | NAC transcription factor 25 | ||||
TrEMBL | A0A0D3HM80 | 0.0 | A0A0D3HM80_9ORYZ; Uncharacterized protein | ||||
STRING | OBART11G14740.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04060.1 | 7e-17 | NAC domain containing protein 46 |