PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OBART11G14740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 263aa MW: 28845.9 Da PI: 9.4913 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.1 | 5.2e-21 | 31 | 113 | 51 | 128 |
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128 ++++ek yfF++++ k ++++r+nr+t++g+W++ g++k+v+ + + vg+++tL+fy g+++++e+t+W m+e+rl OBART11G14740.1 31 LTEREKGKYFFMQKEIKCPSSRRSNRITSKGFWRSAGSEKPVYYNqgG--GsdcmlVGMRRTLTFYFGNSRTAERTKWGMQEFRL 113 45678899***********************************98551..234566***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.711 | 1 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-10 | 26 | 113 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.02E-20 | 31 | 123 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 263 aa Download sequence Send to blast |
MARVVLSTPI VNGATMHLPA VGMSHPTEGA LTEREKGKYF FMQKEIKCPS SRRSNRITSK 60 GFWRSAGSEK PVYYNQGGGS DCMLVGMRRT LTFYFGNSRT AERTKWGMQE FRLAGNGLSP 120 YPAMKHATGD GSKPPCNCAE TTIAKRNDGL SAVLRNVLAV TPLVETVVEP DGSWLICRIY 180 RTRQRALPVI TPPAIENARE IIIPPANGNA REAQVHFIDF LPQGSHIESS SPCSCIVGPS 240 LAEGSDESAG DRFTRLQKKH FSE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FJ940196 | 0.0 | FJ940196.1 Oryza sativa Japonica Group clone KCS246C06 NAM protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615934.1 | 3e-93 | NAC transcription factor 25 | ||||
TrEMBL | A0A0D3HM79 | 0.0 | A0A0D3HM79_9ORYZ; Uncharacterized protein | ||||
STRING | OBART11G14740.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4482 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04060.1 | 1e-16 | NAC domain containing protein 46 |