PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART11G05410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 244aa MW: 26443.3 Da PI: 8.501 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.3 | 5e-19 | 176 | 209 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+Cgt++Tp+WR gpdg+ tLCnaCG++ + + OBART11G05410.1 176 CSHCGTSETPQWRMGPDGPGTLCNACGIRSKMDR 209 *****************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.04E-14 | 169 | 222 | No hit | No description |
PROSITE profile | PS50114 | 13.231 | 170 | 208 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.2E-18 | 170 | 224 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.9E-16 | 174 | 209 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.19E-13 | 175 | 223 | No hit | No description |
Pfam | PF00320 | 7.9E-17 | 176 | 210 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 176 | 201 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MPKPTPSSSS FLDFTGGVDG DDDDPSCPFE GLCCPDDPLD QVLNFDSSDF GHWDHAAAPS 60 SSATTTPSDS SLSSPPSLTS AFPRIARVFP SRTKPRRRCT LRRQHWSLIC PLHLVPVAAA 120 AAADDDDAAA RGKSISELNA SAAADAPSTN DRGGGSYHRR VVGRQRNRQV RKDRRCSHCG 180 TSETPQWRMG PDGPGTLCNA CGIRSKMDRL LPEYRPSTSP GFGSDGYSNR HSKVVKLREK 240 KMRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC128644 | 0.0 | AC128644.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0009F15, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D3HJ28 | 1e-176 | A0A0D3HJ28_9ORYZ; Uncharacterized protein | ||||
STRING | OBART11G05410.1 | 1e-177 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12777 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36240.1 | 6e-25 | GATA transcription factor 7 |