PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G04330.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 291aa    MW: 29544.6 Da    PI: 5.1527
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G04330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.12.5e-09128149224
              AP2   2 gykGVrwdkkrgrWvAeIrdpse 24 
                      +y+GVr+++ +g+W+AeIrdp++
  OBART11G04330.1 128 RYRGVRQRP-WGKWAAEIRDPVK 149
                      8********.**********743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.113128153IPR001471AP2/ERF domain
SMARTSM003801.4E-4128162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-10128153IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-6128152IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MCGGGKVASP PGPRLPRLAG AGGEEEEEEA AAGMLSRHGQ AREMSVMVSA LARVVAGGGG  60
GEAEEWWPPA YGAAPLPPST SPASHEHAAA MAAGQYAPAT SSAMASPREQ ASSPSSGDAA  120
AGGGGRKRYR GVRQRPWGKW AAEIRDPVKA ARLNFPEDAA LLPPPPPPPA PAPTPTPTPP  180
QSQGMVGVGE EYSEYARFLQ GAGEPPHFLE QIMEDSPRPS TAAGASSSSS GQSSFPLFYS  240
FAGHELGGNE ANLARPPESG GAGGDGGRGS SPPATWPGYG WGAPPPWDPS R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130GRKRYRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBankCT8375900.0CT837590.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI220I23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617618.11e-114ethylene-responsive transcription factor ERF110
TrEMBLA0A0D3HIP50.0A0A0D3HIP5_9ORYZ; Uncharacterized protein
STRINGOBART11G04330.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169991212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.12e-06ERF family protein