PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G04060.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 543aa    MW: 61313.8 Da    PI: 6.5389
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G04060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix841.9e-26198294186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      +Wt+++v++Li+a+++ +e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ ++++++++ ++d
  OBART11G04060.1 198 KWTDSMVKLLITAVSYAGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHTLLD 291
                      7*********************8744455667777**********************************************55*********** PP

         trihelix  84 qle 86 
                      +++
  OBART11G04060.1 292 HMD 294
                      *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.9E-20196319No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MWAPRSVGPT CQRETSCSAR PNISAEKEEA EAETAAADCL LAGVQFSRRI PSLYACASSC  60
TPVSILYGTN KKLKCLGDRF GEMEGSNPPG NMSQGPSYGS LDLHGIPKQM HPPNSGNQGF  120
NQPQIPGNFT IPMDRVTEPD NISDRVQLGQ HGKIAHHHHQ HHHRHHSKNR GSDEEEHDMN  180
EDAADGKDMK GSPWHRMKWT DSMVKLLITA VSYAGEDPGA DLGGGRRNYS MMQKKGKWKA  240
ISKVMGERGC HVSPQQCEDK FNDLNKRYKR LTDILGRGTA CNVVENHTLL DHMDISEKMK  300
EDARKILNSK HLFYEEMCSY HNNNRISLPE DPALQQALQL ALRCKEDNDF MRHASGDAEL  360
DDDQSEDSDY EENEEEHRAV DTNIRAPSMH KRMWHVVDHG DVGFVTSCSN DGSGRSDPYD  420
VLDINKPFPD GADLALVQKD LALKAADIQK HRLQIETKAV QLAKQRLKWE MFRKNKDLEL  480
EKLALENEQM MLQNKRFELD LRHKELELEI KIKGNANHPF QMNSIQDRLG GPGMRAIAEM  540
QNG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205330.0AC120533.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence.
GenBankAK1011540.0AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615140.10.0uncharacterized protein LOC4349866 isoform X1
RefseqXP_015615141.10.0uncharacterized protein LOC4349866 isoform X1
TrEMBLA0A0D3HIK90.0A0A0D3HIK9_9ORYZ; Uncharacterized protein
STRINGOBART11G04060.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-82sequence-specific DNA binding transcription factors